-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1434

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g41675.t1
Couldn't classify 2128, 2428
Sorry, prediction Augustus_model.g41674.t1 fails validation.
(ATG)	 TG	2128-2428		CC
Couldn't classify 22, 107
Couldn't classify 2194, 2403
Sorry, prediction GeneMark_model.109332_t fails validation.
(ACA)	 AG	22-107	GT	CTG
(ACC)	 AG	1973-2096	GT	AGG
(CTG)	 AG	2194-2403	GC	AGG
-recovered GeneMark_model.109332_t, internal, 22, 107
-recovered GeneMark_model.109332_t, internal, 1973, 2096
-recovered GeneMark_model.109332_t, internal, 2194, 2403
Couldn't classify 642, 1089
Sorry, prediction GlimmerHMM_glimmerT_62643-T1 fails validation.
(GAC)	 AG	642-1089	GT	GGG
(AAA)	 AG	1185-1906	CA	AAC
-recovered GlimmerHMM_glimmerT_62643-T1, terminal, 1185, 1906
-recovered GlimmerHMM_glimmerT_62643-T1, internal, 642, 1089
Valid prediction for GlimmerHMM_glimmerT_62642-T1
Valid prediction for snap_scaffold_1434-snap.2-T1
Valid prediction for snap_scaffold_1434-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2428
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support