-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1433

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 395, 909
Sorry, prediction snap_scaffold_1433-snap.1-T1 fails validation.
(AAA)	 AG	395-909	GT	TGG
(AAC)	 AG	947-1515	GA	GAG
-recovered snap_scaffold_1433-snap.1-T1, terminal, 947, 1515
-recovered snap_scaffold_1433-snap.1-T1, internal, 395, 909

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62641-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62641-T1 854-2084-terminal-1 is invalid.
Couldn't classify 945, 974
Couldn't classify 2205, 2223
Sorry, prediction GeneMark_model.109331_t fails validation.
(ACT)	 AG	945-974	GT	CTG
(ACT)	 AG	996-1025	GT	CTG
(ACT)	 AG	1047-1127	GT	CTG
(ACT)	 AG	1149-1178	GT	CTG
(ACT)	 AG	1200-1280	GT	CTG
(ACT)	 AG	1302-1331	GT	CTG
(ACT)	 AG	1353-1382	GT	CTG
(ACT)	 AG	1404-1484	GT	CTG
(ACT)	 AG	1505-1585	GT	CTG
(ACT)	 AG	1607-1636	GT	CTG
(ACT)	 AG	1658-1687	GT	CTG
(ACT)	 AG	1710-1739	GT	CTG
(ACT)	 AG	1761-1790	GT	CTG
(ACT)	 AG	1812-1892	GT	CTG
(ACT)	 AG	1914-1949	GT	AGG
(ACT)	 AG	2097-2168	GT	AAG
(AGA)	 AG	2205-2223	GT	CGG
-recovered GeneMark_model.109331_t, internal, 945, 974
-recovered GeneMark_model.109331_t, internal, 996, 1025
-recovered GeneMark_model.109331_t, internal, 1047, 1127
-recovered GeneMark_model.109331_t, internal, 1149, 1178
-recovered GeneMark_model.109331_t, internal, 1200, 1280
-recovered GeneMark_model.109331_t, internal, 1302, 1331
-recovered GeneMark_model.109331_t, internal, 1353, 1382
-recovered GeneMark_model.109331_t, internal, 1404, 1484
-recovered GeneMark_model.109331_t, internal, 1505, 1585
-recovered GeneMark_model.109331_t, internal, 1607, 1636
-recovered GeneMark_model.109331_t, internal, 1658, 1687
-recovered GeneMark_model.109331_t, internal, 1710, 1739
-recovered GeneMark_model.109331_t, internal, 1761, 1790
-recovered GeneMark_model.109331_t, internal, 1812, 1892
-recovered GeneMark_model.109331_t, internal, 1914, 1949
-recovered GeneMark_model.109331_t, internal, 2097, 2168
-recovered GeneMark_model.109331_t, internal, 2205, 2223

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2428
-exon list size: 45


building trellis

2.1    
4.3    
6.4    
8.5    
10.6    
12.8    
14.9    
17.0    
19.1    
21.3    
23.4    
25.5    
27.7    
29.8    
31.9    
34.0    
36.2    
38.3    
40.4    
42.6    
44.7    
46.8    
48.9    
51.1    
53.2    
55.3    
57.4    
59.6    
61.7    
63.8    
66.0    
68.1    
70.2    
72.3    
74.5    
76.6    
78.7    
80.9    
83.0    
85.1    
87.2    
89.4    
91.5    
93.6    
95.7    
97.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support