-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1431

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1311, 1337
Couldn't classify 2211, 2399
Sorry, prediction GeneMark_model.109329_t fails validation.
(GGG)	 AG	1311-1337	GT	GAG
(AGA)	 AG	1364-1381	GT	GAG
(AAA)	 AG	1408-1436	GT	TAG
(ACA)	 AG	1773-1868	GT	AGG
(GGA)	 AG	2137-2179	GT	CAG
(TAG)	 AG	2211-2399	GT	CAG
-recovered GeneMark_model.109329_t, internal, 1311, 1337
-recovered GeneMark_model.109329_t, internal, 1364, 1381
-recovered GeneMark_model.109329_t, internal, 1408, 1436
-recovered GeneMark_model.109329_t, internal, 1773, 1868
-recovered GeneMark_model.109329_t, internal, 2137, 2179
-recovered GeneMark_model.109329_t, internal, 2211, 2399

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2432
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support