-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1428

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 522, 697
Couldn't classify 2289, 2315
Sorry, prediction GeneMark_model.109327_t fails validation.
(GTG)	 AG	522-697	GT	GGG
(ACA)	 AG	2017-2265	GT	GGG
(AGA)	 AG	2289-2315	GT	GGG
-recovered GeneMark_model.109327_t, internal, 522, 697
-recovered GeneMark_model.109327_t, internal, 2017, 2265
-recovered GeneMark_model.109327_t, internal, 2289, 2315
Valid prediction for Augustus_model.g41672.t1
add_exon() Sorry, Augustus_model.g41672.t1 522-620-internal-3 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2440
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support