-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1427

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2019, 2034
Sorry, prediction GeneMark_model.109326_t fails validation.
(ATG)	 AG	481-492	GT	GAG
(ATG)	 AG	517-528	GT	GAG
(GGG)	 AG	562-567	GT	GAG
(TGG)	 AG	589-609	GT	GAG
(AAA)	 AG	646-693	GT	GAG
(GGG)	 AG	711-716	GT	GAG
(AGG)	 AG	744-848	GT	ATG
(AGA)	 AG	944-981	GT	AGG
(GCC)	 AG	1359-1404	GT	GGG
(GCA)	 AG	1531-1566	GT	AGG
(AGA)	 AG	1737-1751	GT	GAG
(AGA)	 AG	1775-1801	GT	GGG
(TGT)	 AG	1839-1877	GT	GGG
(AGA)	 AG	1925-1993	GT	GGG
(GAC)	 AG	2019-2034	GT	CTG
-recovered GeneMark_model.109326_t, initial, 481, 492
-recovered GeneMark_model.109326_t, initial, 517, 528
-recovered GeneMark_model.109326_t, terminal, 944, 981
-recovered GeneMark_model.109326_t, internal, 481, 492
-recovered GeneMark_model.109326_t, internal, 517, 528
-recovered GeneMark_model.109326_t, internal, 562, 567
-recovered GeneMark_model.109326_t, internal, 589, 609
-recovered GeneMark_model.109326_t, internal, 646, 693
-recovered GeneMark_model.109326_t, internal, 711, 716
-recovered GeneMark_model.109326_t, internal, 744, 848
-recovered GeneMark_model.109326_t, internal, 944, 981
-recovered GeneMark_model.109326_t, internal, 1359, 1404
-recovered GeneMark_model.109326_t, internal, 1531, 1566
-recovered GeneMark_model.109326_t, internal, 1737, 1751
-recovered GeneMark_model.109326_t, internal, 1775, 1801
-recovered GeneMark_model.109326_t, internal, 1839, 1877
-recovered GeneMark_model.109326_t, internal, 1925, 1993
-recovered GeneMark_model.109326_t, internal, 2019, 2034

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2440
-exon list size: 38


building trellis

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45.0    
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97.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support