-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1426

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 156, 368
Couldn't classify 1840, 2002
Sorry, prediction GeneMark_model.109325_t fails validation.
(GGT)	 AG	156-368	GT	CTG
(AGG)	 AG	1315-1455	GT	GAG
(AGA)	 AG	1840-2002	GC	GAG
-recovered GeneMark_model.109325_t, internal, 156, 368
-recovered GeneMark_model.109325_t, internal, 1315, 1455
-recovered GeneMark_model.109325_t, internal, 1840, 2002
Couldn't classify 118, 387
Sorry, prediction snap_scaffold_1426-snap.1-T1 fails validation.
(ATC)	 AG	118-387	GT	TTG
(ATT)	 AG	1191-1213	TT	AGT
-recovered snap_scaffold_1426-snap.1-T1, terminal, 1191, 1213
-recovered snap_scaffold_1426-snap.1-T1, internal, 118, 387

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2441
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support