-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1425

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 18, 198
Sorry, prediction GeneMark_model.109323_t fails validation.
(TCA)	 AG	18-198	GT	GGG
(GGA)	 AG	314-783	CA	GAC
-recovered GeneMark_model.109323_t, terminal, 314, 783
-recovered GeneMark_model.109323_t, internal, 18, 198
Couldn't classify 24, 198
Couldn't classify 314, 699
Sorry, prediction pasa_asmbl_13860.p1 fails validation.
(ACC)	 CC	24-198	GT	GGG
(GGA)	 AG	314-699	AA	GTA
Couldn't classify 1, 198
Sorry, prediction Augustus_model.g41671.t1 fails validation.
(CCA)	 TG	1-198	GT	GGG
(GGA)	 AG	314-697	GT	AGG
(TCC)	 AG	2117-2250	TC	AGT
-recovered Augustus_model.g41671.t1, terminal, 2117, 2250
-recovered Augustus_model.g41671.t1, internal, 314, 697
Couldn't classify 314, 697
Sorry, prediction GlimmerHMM_glimmerT_62639-T1 fails validation.
(ATG)	 AC	42-198	GT	GGG
(GGA)	 AG	314-697	GT	AGG
-recovered GlimmerHMM_glimmerT_62639-T1, initial, 42, 198
-recovered GlimmerHMM_glimmerT_62639-T1, internal, 314, 697
Couldn't classify 2128, 2245
Sorry, prediction snap_scaffold_1425-snap.1-T1 fails validation.
(ATG)	 TG	45-198	GT	GGG
(GGA)	 AG	314-697	GT	AGG
(CCT)	 AG	2128-2245	GT	TTG
-recovered snap_scaffold_1425-snap.1-T1, initial, 45, 198
-recovered snap_scaffold_1425-snap.1-T1, internal, 314, 697
-recovered snap_scaffold_1425-snap.1-T1, internal, 2128, 2245

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 260, 456
Sorry, prediction GeneMark_model.109324_t fails validation.
(GGG)	 AG	260-456	GT	GTG
(AGC)	 AG	565-575	GT	GAG
(CTG)	 AG	728-809	GT	CAG
(GGA)	 AG	857-889	GT	GAG
(GGA)	 AG	951-962	GT	AGG
(GCC)	 AG	1267-1290	GT	GAG
(TGG)	 AG	1325-1354	GT	GAG
(GGA)	 AG	1378-1392	GT	GAG
(ATA)	 AG	1553-1556	AT	AGA
-recovered GeneMark_model.109324_t, terminal, 565, 575
-recovered GeneMark_model.109324_t, terminal, 1553, 1556
-recovered GeneMark_model.109324_t, internal, 260, 456
-recovered GeneMark_model.109324_t, internal, 565, 575
-recovered GeneMark_model.109324_t, internal, 728, 809
-recovered GeneMark_model.109324_t, internal, 857, 889
-recovered GeneMark_model.109324_t, internal, 951, 962
-recovered GeneMark_model.109324_t, internal, 1267, 1290
-recovered GeneMark_model.109324_t, internal, 1325, 1354
-recovered GeneMark_model.109324_t, internal, 1378, 1392
Couldn't classify 728, 809
Sorry, prediction snap_scaffold_1425-snap.2-T1 fails validation.
(CTG)	 AG	728-809	GT	CAG
(GGG)	 AG	1695-1886	GT	ATG
(GCC)	 AG	2259-2328	GA	GAG
-recovered snap_scaffold_1425-snap.2-T1, terminal, 2259, 2328
-recovered snap_scaffold_1425-snap.2-T1, internal, 728, 809
-recovered snap_scaffold_1425-snap.2-T1, internal, 1695, 1886

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2245, rend_intergenic: 117  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2444
-exon list size: 30


building trellis

3.1    
6.2    
9.4    
12.5    
15.6    
18.8    
21.9    
25.0    
28.1    
31.2    
34.4    
37.5    
40.6    
43.8    
46.9    
50.0    
53.1    
56.2    
59.4    
62.5    
65.6    
68.8    
71.9    
75.0    
78.1    
81.2    
84.4    
87.5    
90.6    
93.8    
96.9    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 2245, rend_intergenic: 117  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support