-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1421

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2430, 2443
Sorry, prediction GeneMark_model.109320_t fails validation.
(ATG)	 AG	11-706	GT	AGG
(GGT)	 AG	1621-1716	GT	AGG
(GAT)	 AG	2036-2401	GT	ACG
(AGC)	 AG	2430-2443	GT	AGG
-recovered GeneMark_model.109320_t, initial, 11, 706
-recovered GeneMark_model.109320_t, internal, 11, 706
-recovered GeneMark_model.109320_t, internal, 1621, 1716
-recovered GeneMark_model.109320_t, internal, 2036, 2401
-recovered GeneMark_model.109320_t, internal, 2430, 2443
Valid prediction for GlimmerHMM_glimmerT_62636-T1
Couldn't classify 2036, 2443
Sorry, prediction snap_scaffold_1421-snap.1-T1 fails validation.
(ATG)	 AG	11-694	GT	AGG
(GGT)	 AG	1621-1716	GT	AGG
(GAT)	 AG	2036-2443	GT	AGG
-recovered snap_scaffold_1421-snap.1-T1, initial, 11, 694
-recovered snap_scaffold_1421-snap.1-T1, internal, 11, 694
-recovered snap_scaffold_1421-snap.1-T1, internal, 1621, 1716
-recovered snap_scaffold_1421-snap.1-T1, internal, 2036, 2443
Valid prediction for GlimmerHMM_glimmerT_62637-T1
Couldn't classify 1595, 1716
Couldn't classify 2036, 2443
Sorry, prediction Augustus_model.g41669.t1 fails validation.
(TTT)	 AG	1595-1716	GT	AGG
(GAT)	 AG	2036-2443	GT	AGG
-recovered Augustus_model.g41669.t1, internal, 1595, 1716
-recovered Augustus_model.g41669.t1, internal, 2036, 2443

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2461
-exon list size: 18


building trellis

5.0    
10.0    
15.0    
20.0    
25.0    
30.0    
35.0    
40.0    
45.0    
50.0    
55.0    
60.0    
65.0    
70.0    
75.0    
80.0    
85.0    
90.0    
95.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support