-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1419

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 434, 577
Couldn't classify 2271, 2370
Sorry, prediction snap_scaffold_1419-snap.2-T1 fails validation.
(GGG)	 AG	434-577	GT	CGG
(TCC)	 AG	2271-2370	GT	ATG
-recovered snap_scaffold_1419-snap.2-T1, internal, 434, 577
-recovered snap_scaffold_1419-snap.2-T1, internal, 2271, 2370

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 639, 674
Sorry, prediction GeneMark_model.109319_t fails validation.
(CGA)	 AG	639-674	GT	GTG
(AGT)	 AG	921-941	GT	GAG
(TGT)	 AG	1021-1035	GT	GTG
(AAC)	 AG	1058-1063	GT	GAG
(AGA)	 AG	1107-1116	GT	AGG
(TAT)	 AG	1248-1345	GT	CCG
(CCC)	 AG	1778-1979	AG	GAA
-recovered GeneMark_model.109319_t, terminal, 1778, 1979
-recovered GeneMark_model.109319_t, internal, 639, 674
-recovered GeneMark_model.109319_t, internal, 921, 941
-recovered GeneMark_model.109319_t, internal, 1021, 1035
-recovered GeneMark_model.109319_t, internal, 1058, 1063
-recovered GeneMark_model.109319_t, internal, 1107, 1116
-recovered GeneMark_model.109319_t, internal, 1248, 1345
Valid prediction for GlimmerHMM_glimmerT_62635-T1
Couldn't classify 2007, 2204
Sorry, prediction snap_scaffold_1419-snap.1-T1 fails validation.
(ATG)	 AA	530-561	GT	GGG
(CCC)	 AG	1763-1955	GT	TGG
(GGT)	 AG	2007-2204	GT	ACG
-recovered snap_scaffold_1419-snap.1-T1, initial, 530, 561
-recovered snap_scaffold_1419-snap.1-T1, internal, 1763, 1955
-recovered snap_scaffold_1419-snap.1-T1, internal, 2007, 2204
Valid prediction for Augustus_model.g41668.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1934, rend_intergenic: 434  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2463
-exon list size: 23


building trellis

4.0    
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24.0    
28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
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56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
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84.0    
88.0    
92.0    
96.0    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1934, rend_intergenic: 434  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support