-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1416

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 9, 107
Couldn't classify 2399, 2434
Sorry, prediction GeneMark_model.109317_t fails validation.
(AGA)	 AG	9-107	GT	AGG
(AGG)	 AG	136-159	GT	AGG
(AGG)	 AG	188-211	GT	AGG
(GCT)	 AG	1663-1674	GC	AGG
(GCT)	 AG	1701-1733	GT	GGG
(GCG)	 AG	1771-1785	GT	GGG
(AAT)	 AG	1809-1832	GC	AGG
(AGA)	 AG	1855-1863	GT	GAG
(AGA)	 AG	1901-1921	GT	GGG
(GGT)	 AG	1949-1969	GT	AAG
(GAG)	 AG	2047-2080	GT	AGG
(GAG)	 AG	2305-2375	GT	GAG
(AGG)	 AG	2399-2434	GC	GGG
-recovered GeneMark_model.109317_t, internal, 9, 107
-recovered GeneMark_model.109317_t, internal, 136, 159
-recovered GeneMark_model.109317_t, internal, 188, 211
-recovered GeneMark_model.109317_t, internal, 1663, 1674
-recovered GeneMark_model.109317_t, internal, 1701, 1733
-recovered GeneMark_model.109317_t, internal, 1771, 1785
-recovered GeneMark_model.109317_t, internal, 1809, 1832
-recovered GeneMark_model.109317_t, internal, 1855, 1863
-recovered GeneMark_model.109317_t, internal, 1901, 1921
-recovered GeneMark_model.109317_t, internal, 1949, 1969
-recovered GeneMark_model.109317_t, internal, 2047, 2080
-recovered GeneMark_model.109317_t, internal, 2305, 2375
-recovered GeneMark_model.109317_t, internal, 2399, 2434

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2466
-exon list size: 31


building trellis

3.0    
6.1    
9.1    
12.1    
15.2    
18.2    
21.2    
24.2    
27.3    
30.3    
33.3    
36.4    
39.4    
42.4    
45.5    
48.5    
51.5    
54.5    
57.6    
60.6    
63.6    
66.7    
69.7    
72.7    
75.8    
78.8    
81.8    
84.8    
87.9    
90.9    
93.9    
97.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support