-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1413

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 459, 476
Couldn't classify 2382, 2422
Sorry, prediction GeneMark_model.109314_t fails validation.
(GGC)	 AG	459-476	GT	TTG
(AGG)	 AG	503-562	GT	AAG
(AGT)	 AG	588-610	GT	AAG
(GGG)	 AG	2210-2337	GT	CAG
(GAG)	 AG	2382-2422	GT	GAG
-recovered GeneMark_model.109314_t, internal, 459, 476
-recovered GeneMark_model.109314_t, internal, 503, 562
-recovered GeneMark_model.109314_t, internal, 588, 610
-recovered GeneMark_model.109314_t, internal, 2210, 2337
-recovered GeneMark_model.109314_t, internal, 2382, 2422

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2470
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support