-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1412

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 138, 250
Couldn't classify 2261, 2292
Sorry, prediction GeneMark_model.109313_t fails validation.
(GGA)	 AG	138-250	GT	GTG
(AGG)	 AG	472-646	GT	AGG
(AAG)	 AG	676-708	GT	AGG
(TGG)	 AG	992-1086	GT	GAG
(AAA)	 AG	1364-1405	GC	AGG
(AGA)	 AG	1453-1503	GT	GGG
(AAT)	 AG	1639-1659	GT	CGG
(GGA)	 AG	1692-1766	GT	AGG
(AGA)	 AG	2036-2077	GC	AGG
(AGC)	 AG	2261-2292	GT	AAG
add_exon() Sorry, GeneMark_model.109313_t 992-1086-terminal-2 is invalid.
-recovered GeneMark_model.109313_t, terminal, 992, 1086
-recovered GeneMark_model.109313_t, internal, 138, 250
-recovered GeneMark_model.109313_t, internal, 472, 646
-recovered GeneMark_model.109313_t, internal, 676, 708
-recovered GeneMark_model.109313_t, internal, 992, 1086
-recovered GeneMark_model.109313_t, internal, 1364, 1405
-recovered GeneMark_model.109313_t, internal, 1453, 1503
-recovered GeneMark_model.109313_t, internal, 1639, 1659
-recovered GeneMark_model.109313_t, internal, 1692, 1766
-recovered GeneMark_model.109313_t, internal, 2036, 2077
-recovered GeneMark_model.109313_t, internal, 2261, 2292
Couldn't classify 427, 646
Sorry, prediction snap_scaffold_1412-snap.2-T1 fails validation.
(GTT)	 AG	427-646	GT	AGG
-recovered snap_scaffold_1412-snap.2-T1, internal, 427, 646

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62634-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62634-T1 2228-2397-terminal-1 is invalid.
Couldn't classify 2172, 2193
Sorry, prediction snap_scaffold_1412-snap.1-T1 fails validation.
(GGT)	 AG	2172-2193	GT	AAG
(GCC)	 AG	2240-2397	AG	AGA
-recovered snap_scaffold_1412-snap.1-T1, terminal, 2240, 2397
-recovered snap_scaffold_1412-snap.1-T1, internal, 2172, 2193

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2473
-exon list size: 23


building trellis

4.0    
8.0    
12.0    
16.0    
20.0    
24.0    
28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
52.0    
56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
88.0    
92.0    
96.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support