-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1411

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 193, 248
Sorry, prediction Augustus_model.g41667.t1 fails validation.
(GGG)	 AG	193-248	GT	CTG
(ACA)	 AG	600-679	AT	AAA
-recovered Augustus_model.g41667.t1, terminal, 600, 679
-recovered Augustus_model.g41667.t1, internal, 193, 248
Couldn't classify 193, 252
Couldn't classify 2295, 2437
Sorry, prediction snap_scaffold_1411-snap.1-T1 fails validation.
(GGG)	 AG	193-252	GT	AAG
(ACA)	 AG	600-727	GT	AGG
(AGG)	 AG	2295-2437	GT	GAG
-recovered snap_scaffold_1411-snap.1-T1, terminal, 193, 252
-recovered snap_scaffold_1411-snap.1-T1, internal, 193, 252
-recovered snap_scaffold_1411-snap.1-T1, internal, 600, 727
-recovered snap_scaffold_1411-snap.1-T1, internal, 2295, 2437
Couldn't classify 193, 272
Couldn't classify 2378, 2437
Sorry, prediction GeneMark_model.109312_t fails validation.
(GGG)	 AG	193-272	GT	AGG
(CCT)	 AG	1916-2052	GC	GAG
(AGA)	 AG	2076-2114	GC	GAG
(AGA)	 AG	2138-2233	GT	CGG
(GGG)	 AG	2320-2343	GT	AGG
(CAG)	 AG	2378-2437	GT	GAG
-recovered GeneMark_model.109312_t, internal, 193, 272
-recovered GeneMark_model.109312_t, internal, 1916, 2052
-recovered GeneMark_model.109312_t, internal, 2076, 2114
-recovered GeneMark_model.109312_t, internal, 2138, 2233
-recovered GeneMark_model.109312_t, internal, 2320, 2343
-recovered GeneMark_model.109312_t, internal, 2378, 2437

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 492, 586
Sorry, prediction snap_scaffold_1411-snap.2-T1 fails validation.
(AGA)	 AG	492-586	GT	GTG
(GGA)	 AG	827-912	GT	AGG
(ATT)	 AG	1653-1659	AA	AAA
-recovered snap_scaffold_1411-snap.2-T1, terminal, 1653, 1659
-recovered snap_scaffold_1411-snap.2-T1, internal, 492, 586
-recovered snap_scaffold_1411-snap.2-T1, internal, 827, 912
Valid prediction for GlimmerHMM_glimmerT_62633-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62633-T1 492-717-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2437, rend_intergenic: 821  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2479
-exon list size: 28


building trellis

3.3    
6.7    
10.0    
13.3    
16.7    
20.0    
23.3    
26.7    
30.0    
33.3    
36.7    
40.0    
43.3    
46.7    
50.0    
53.3    
56.7    
60.0    
63.3    
66.7    
70.0    
73.3    
76.7    
80.0    
83.3    
86.7    
90.0    
93.3    
96.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2437, rend_intergenic: 821  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support