-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1409

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2410, 2468
Sorry, prediction GeneMark_model.109310_t fails validation.
(ATG)	 TC	2160-2239	GT	GAG
(AGA)	 AG	2330-2374	GC	GAG
(AAA)	 AG	2410-2468	GC	GAG
-recovered GeneMark_model.109310_t, initial, 2160, 2239
-recovered GeneMark_model.109310_t, internal, 2330, 2374
-recovered GeneMark_model.109310_t, internal, 2410, 2468

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 304, 354
Couldn't classify 2204, 2242
Sorry, prediction pasa_asmbl_13859.p1 fails validation.
(CAG)	 TG	304-354	GT	AGG
(CTT)	 AG	450-618	GT	AGG
(GCC)	 AG	1791-1873	GT	CGG
(GAT)	 AG	2204-2242	GG	AGG
-recovered pasa_asmbl_13859.p1, internal, 450, 618
-recovered pasa_asmbl_13859.p1, internal, 1791, 1873
Couldn't classify 307, 354
Sorry, prediction GlimmerHMM_glimmerT_62630-T1 fails validation.
(AGT)	 AG	307-354	GT	AGG
(CTT)	 AG	450-618	GT	AGG
(GCC)	 AG	1791-1951	AC	GAA
-recovered GlimmerHMM_glimmerT_62630-T1, terminal, 1791, 1951
-recovered GlimmerHMM_glimmerT_62630-T1, internal, 307, 354
-recovered GlimmerHMM_glimmerT_62630-T1, internal, 450, 618
Couldn't classify 307, 354
Couldn't classify 2204, 2284
Sorry, prediction snap_scaffold_1409-snap.1-T1 fails validation.
(AGT)	 AG	307-354	GT	AGG
(CTT)	 AG	450-618	GT	AGG
(GCC)	 AG	1791-1873	GT	CGG
(GAT)	 AG	2204-2284	GT	AGG
-recovered snap_scaffold_1409-snap.1-T1, internal, 307, 354
-recovered snap_scaffold_1409-snap.1-T1, internal, 450, 618
-recovered snap_scaffold_1409-snap.1-T1, internal, 1791, 1873
-recovered snap_scaffold_1409-snap.1-T1, internal, 2204, 2284
Couldn't classify 307, 354
Couldn't classify 2204, 2284
Sorry, prediction Augustus_model.g41665.t1 fails validation.
(AGT)	 AG	307-354	GT	AGG
(CTT)	 AG	450-618	GT	AGG
(GCC)	 AG	1791-1873	GT	CGG
(GAT)	 AG	2204-2284	GT	AGG
-recovered Augustus_model.g41665.t1, internal, 307, 354
-recovered Augustus_model.g41665.t1, internal, 450, 618
-recovered Augustus_model.g41665.t1, internal, 1791, 1873
-recovered Augustus_model.g41665.t1, internal, 2204, 2284
Couldn't classify 2204, 2284
Sorry, prediction GeneMark_model.109309_t fails validation.
(ATG)	 TT	346-354	GT	AGG
(CTT)	 AG	450-618	GT	AGG
(GCC)	 AG	1791-1873	GT	CGG
(GAT)	 AG	2204-2284	GT	AGG
-recovered GeneMark_model.109309_t, initial, 346, 354
-recovered GeneMark_model.109309_t, internal, 450, 618
-recovered GeneMark_model.109309_t, internal, 1791, 1873
-recovered GeneMark_model.109309_t, internal, 2204, 2284

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2482
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support