-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1408

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 297, 381
Couldn't classify 1939, 1959
Sorry, prediction GeneMark_model.109308_t fails validation.
(GTC)	 AG	297-381	GT	GGG
(GCA)	 AG	562-663	GT	AAG
(GGG)	 AG	1766-1786	GT	GAG
(GGG)	 AG	1807-1914	GT	GAG
(GGA)	 AG	1939-1959	GT	AGG
-recovered GeneMark_model.109308_t, internal, 297, 381
-recovered GeneMark_model.109308_t, internal, 562, 663
-recovered GeneMark_model.109308_t, internal, 1766, 1786
-recovered GeneMark_model.109308_t, internal, 1807, 1914
-recovered GeneMark_model.109308_t, internal, 1939, 1959
Couldn't classify 297, 381
Couldn't classify 1089, 1185
Sorry, prediction Augustus_model.g41664.t1 fails validation.
(GTC)	 AG	297-381	GT	GGG
(GCA)	 AG	562-669	GT	AGG
(CAG)	 AG	1089-1185	GT	AGG
-recovered Augustus_model.g41664.t1, internal, 297, 381
-recovered Augustus_model.g41664.t1, internal, 562, 669
-recovered Augustus_model.g41664.t1, internal, 1089, 1185
Couldn't classify 297, 381
Couldn't classify 1089, 1185
Sorry, prediction snap_scaffold_1408-snap.1-T1 fails validation.
(GTC)	 AG	297-381	GT	GGG
(GCA)	 AG	562-669	GT	AGG
(CAG)	 AG	1089-1185	GT	AGG
-recovered snap_scaffold_1408-snap.1-T1, internal, 297, 381
-recovered snap_scaffold_1408-snap.1-T1, internal, 562, 669
-recovered snap_scaffold_1408-snap.1-T1, internal, 1089, 1185

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2484
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support