-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1407

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 183, 263
Couldn't classify 2350, 2446
Sorry, prediction GeneMark_model.109307_t fails validation.
(TCT)	 AG	183-263	GT	GTG
(GGA)	 AG	1838-1849	GC	AGG
(AGA)	 AG	1870-1881	GC	AGG
(GCA)	 AG	1906-1953	GC	AGG
(GCA)	 AG	1978-2102	GT	AGG
(CCT)	 AG	2123-2168	GT	TTG
(CTC)	 AG	2350-2446	GT	ATG
-recovered GeneMark_model.109307_t, terminal, 1978, 2102
-recovered GeneMark_model.109307_t, internal, 183, 263
-recovered GeneMark_model.109307_t, internal, 1838, 1849
-recovered GeneMark_model.109307_t, internal, 1870, 1881
-recovered GeneMark_model.109307_t, internal, 1906, 1953
-recovered GeneMark_model.109307_t, internal, 1978, 2102
-recovered GeneMark_model.109307_t, internal, 2123, 2168
-recovered GeneMark_model.109307_t, internal, 2350, 2446
Couldn't classify 2318, 2446
Sorry, prediction snap_scaffold_1407-snap.1-T1 fails validation.
(ATG)	 AC	865-888	GT	CTG
(CCT)	 AG	2123-2245	GT	TGG
(CGG)	 AG	2318-2446	GT	ATG
-recovered snap_scaffold_1407-snap.1-T1, initial, 865, 888
-recovered snap_scaffold_1407-snap.1-T1, internal, 2123, 2245
-recovered snap_scaffold_1407-snap.1-T1, internal, 2318, 2446

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2484
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support