-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1406

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1446, 1591
Couldn't classify 2263, 2387
Sorry, prediction GeneMark_model.109306_t fails validation.
(AGG)	 AG	1446-1591	GT	TGG
(GTG)	 AG	1615-1711	GT	AAG
(GGG)	 AG	1803-1961	GT	AAG
(AGA)	 AG	2044-2091	GT	AGG
(ACA)	 AG	2116-2124	GT	GAG
(AGA)	 AG	2151-2237	GT	GGG
(AGG)	 AG	2263-2387	GT	AGG
-recovered GeneMark_model.109306_t, internal, 1446, 1591
-recovered GeneMark_model.109306_t, internal, 1615, 1711
-recovered GeneMark_model.109306_t, internal, 1803, 1961
-recovered GeneMark_model.109306_t, internal, 2044, 2091
-recovered GeneMark_model.109306_t, internal, 2116, 2124
-recovered GeneMark_model.109306_t, internal, 2151, 2237
-recovered GeneMark_model.109306_t, internal, 2263, 2387

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 744, 928
Couldn't classify 1063, 1089
Sorry, prediction snap_scaffold_1406-snap.1-T1 fails validation.
(GTC)	 AG	744-928	GT	AAG
(GTC)	 AG	984-1018	GT	AGG
(AGT)	 AG	1063-1089	GT	AGG
-recovered snap_scaffold_1406-snap.1-T1, internal, 744, 928
-recovered snap_scaffold_1406-snap.1-T1, internal, 984, 1018
-recovered snap_scaffold_1406-snap.1-T1, internal, 1063, 1089

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2487
-exon list size: 23


building trellis

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8.0    
12.0    
16.0    
20.0    
24.0    
28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
52.0    
56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
88.0    
92.0    
96.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support