-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1405

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 604, 726
Sorry, prediction GeneMark_model.109305_t fails validation.
(ACA)	 AG	604-726	GT	AAG
(AAA)	 AG	748-762	GT	GAG
(AGA)	 AG	824-881	GA	GAG
-recovered GeneMark_model.109305_t, terminal, 824, 881
-recovered GeneMark_model.109305_t, internal, 604, 726
-recovered GeneMark_model.109305_t, internal, 748, 762
Couldn't classify 2236, 2366
Sorry, prediction GeneMark_model.109303_t fails validation.
(ATG)	 GT	1252-1277	GT	GGG
(AGA)	 AG	1369-1458	GT	CGG
(GGG)	 AG	2236-2366	GT	CCG
-recovered GeneMark_model.109303_t, initial, 1252, 1277
-recovered GeneMark_model.109303_t, internal, 1369, 1458
-recovered GeneMark_model.109303_t, internal, 2236, 2366

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2488
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support