-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1404

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 38, 72
Sorry, prediction snap_scaffold_1404-snap.1-T1 fails validation.
(CAT)	 AG	38-72	GT	AGG
(CGT)	 AG	160-247	GT	ACG
(AGG)	 AG	885-1029	TC	GAT
-recovered snap_scaffold_1404-snap.1-T1, terminal, 885, 1029
-recovered snap_scaffold_1404-snap.1-T1, internal, 38, 72
-recovered snap_scaffold_1404-snap.1-T1, internal, 160, 247

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.109301_t
Couldn't classify 35, 64
Sorry, prediction GeneMark_model.109302_t fails validation.
(TCG)	 AG	35-64	GT	ACG
(GGA)	 AG	397-473	GT	AGG
(CGC)	 AG	723-784	TG	GAT
-recovered GeneMark_model.109302_t, terminal, 723, 784
-recovered GeneMark_model.109302_t, internal, 35, 64
-recovered GeneMark_model.109302_t, internal, 397, 473
Valid prediction for snap_scaffold_1404-snap.2-T1
Valid prediction for GeneMark_model.109300_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2493
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support