-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1403

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1403-snap.1-T1
Couldn't classify 785, 929
Sorry, prediction Augustus_model.g41663.t1 fails validation.
(GAA)	 AG	785-929	GT	AGG
(GCT)	 AG	1911-2027	AA	AGA
-recovered Augustus_model.g41663.t1, terminal, 1911, 2027
-recovered Augustus_model.g41663.t1, internal, 785, 929
Couldn't classify 38, 967
Sorry, prediction GeneMark_model.109298_t fails validation.
(AGA)	 AG	38-967	GT	AGG
(ACG)	 AG	1868-2027	AA	AGA
-recovered GeneMark_model.109298_t, terminal, 1868, 2027
-recovered GeneMark_model.109298_t, internal, 38, 967
Couldn't classify 2449, 2474
Sorry, prediction GeneMark_model.109299_t fails validation.
(ATG)	 AC	2110-2138	GT	AGG
(GGT)	 AG	2165-2311	GT	AGG
(GAG)	 AG	2333-2401	GT	CAG
(TAA)	 AG	2449-2474	GT	AGG
-recovered GeneMark_model.109299_t, initial, 2110, 2138
-recovered GeneMark_model.109299_t, internal, 2165, 2311
-recovered GeneMark_model.109299_t, internal, 2333, 2401
-recovered GeneMark_model.109299_t, internal, 2449, 2474
Valid prediction for GlimmerHMM_glimmerT_62629-T1
Valid prediction for snap_scaffold_1403-snap.3-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 545, 610
Couldn't classify 1581, 1755
Sorry, prediction snap_scaffold_1403-snap.2-T1 fails validation.
(GTG)	 AG	545-610	GT	TGG
(GTG)	 AG	1581-1755	GT	AGG
-recovered snap_scaffold_1403-snap.2-T1, internal, 545, 610
-recovered snap_scaffold_1403-snap.2-T1, internal, 1581, 1755

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2027, rend_intergenic: 742  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2496
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 2027, rend_intergenic: 742  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support