-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1402

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_1402-snap.1-T1
add_exon() Sorry, snap_scaffold_1402-snap.1-T1 926-1425-terminal-1 is invalid.
Couldn't classify 52, 66
Sorry, prediction GeneMark_model.109297_t fails validation.
(GGA)	 AG	52-66	GT	AGG
(AGG)	 AG	730-768	GT	GGG
(TGA)	 AG	792-875	GT	GAG
(AGA)	 AG	897-917	GT	AGG
(ACG)	 AG	961-1236	GC	GCG
(GGA)	 AG	1260-1421	GT	ATG
(AGA)	 AG	1886-1936	GT	AGG
(AAA)	 AG	1975-2103	GT	AGG
(AGA)	 AG	2124-2129	GT	AGG
(AGA)	 AG	2465-2489	GG	GAG
-recovered GeneMark_model.109297_t, terminal, 2465, 2489
-recovered GeneMark_model.109297_t, internal, 52, 66
-recovered GeneMark_model.109297_t, internal, 730, 768
-recovered GeneMark_model.109297_t, internal, 792, 875
-recovered GeneMark_model.109297_t, internal, 897, 917
-recovered GeneMark_model.109297_t, internal, 961, 1236
-recovered GeneMark_model.109297_t, internal, 1260, 1421
-recovered GeneMark_model.109297_t, internal, 1886, 1936
-recovered GeneMark_model.109297_t, internal, 1975, 2103
-recovered GeneMark_model.109297_t, internal, 2124, 2129

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2496
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support