-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1401

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 260, 335
Sorry, prediction snap_scaffold_1401-snap.1-T1 fails validation.
(CGT)	 AG	260-335	GT	AAG
(ATT)	 AG	384-442	GT	GTG
(ATG)	 AG	2399-2469	GT	AGG
-recovered snap_scaffold_1401-snap.1-T1, initial, 2399, 2469
-recovered snap_scaffold_1401-snap.1-T1, terminal, 2399, 2469
-recovered snap_scaffold_1401-snap.1-T1, internal, 260, 335
-recovered snap_scaffold_1401-snap.1-T1, internal, 384, 442
-recovered snap_scaffold_1401-snap.1-T1, internal, 2399, 2469

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 265, 340
Sorry, prediction GlimmerHMM_glimmerT_62628-T1 fails validation.
(CTC)	 AG	265-340	GT	ACG
(TAC)	 AG	796-1011	CA	AAC
-recovered GlimmerHMM_glimmerT_62628-T1, terminal, 796, 1011
-recovered GlimmerHMM_glimmerT_62628-T1, internal, 265, 340
Couldn't classify 25, 110
Couldn't classify 1528, 1636
Sorry, prediction snap_scaffold_1401-snap.2-T1 fails validation.
(GAC)	 AG	25-110	GT	AGG
(GTG)	 AG	283-340	GT	ACG
(TAC)	 AG	796-970	GT	GGG
(GAA)	 AG	1528-1636	GT	CGG
-recovered snap_scaffold_1401-snap.2-T1, internal, 25, 110
-recovered snap_scaffold_1401-snap.2-T1, internal, 283, 340
-recovered snap_scaffold_1401-snap.2-T1, internal, 796, 970
-recovered snap_scaffold_1401-snap.2-T1, internal, 1528, 1636
Couldn't classify 265, 340
Couldn't classify 1528, 1636
Sorry, prediction Augustus_model.g41662.t1 fails validation.
(CTC)	 AG	265-340	GT	ACG
(TAC)	 AG	796-970	GT	GGG
(GAA)	 AG	1528-1636	GT	CGG
-recovered Augustus_model.g41662.t1, internal, 265, 340
-recovered Augustus_model.g41662.t1, internal, 796, 970
-recovered Augustus_model.g41662.t1, internal, 1528, 1636
Couldn't classify 25, 110
Sorry, prediction GeneMark_model.109296_t fails validation.
(GAC)	 AG	25-110	GT	AGG
(GTG)	 AG	283-340	GT	ACG
(TAC)	 AG	796-970	GT	GGG
(GAA)	 AG	1528-1643	GT	ACG
(CAG)	 AG	2087-2098	AA	GAA
-recovered GeneMark_model.109296_t, terminal, 2087, 2098
-recovered GeneMark_model.109296_t, internal, 25, 110
-recovered GeneMark_model.109296_t, internal, 283, 340
-recovered GeneMark_model.109296_t, internal, 796, 970
-recovered GeneMark_model.109296_t, internal, 1528, 1643

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2469, rend_intergenic: 863  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2498
-exon list size: 18


building trellis

5.0    
10.0    
15.0    
20.0    
25.0    
30.0    
35.0    
40.0    
45.0    
50.0    
55.0    
60.0    
65.0    
70.0    
75.0    
80.0    
85.0    
90.0    
95.0    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2469, rend_intergenic: 863  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support