-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_14/scaffold_14_9592101-9822643

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_35212-T1
Valid prediction for GlimmerHMM_glimmerT_35210-T1
Valid prediction for GeneMark_model.60436_t
Valid prediction for GeneMark_model.60395_t
Valid prediction for snap_scaffold_14-snap.2030-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GeneMark_model.60401_t
Valid prediction for snap_scaffold_14-snap.2041-T1
Couldn't classify 1048, 3076
Sorry, prediction pasa_asmbl_12274.p1 fails validation.
(CTG)	 CC	1048-3076	GT	CAG
(ATG)	 AG	4963-5164	GT	CGG
(CCT)	 AG	5907-6121	GT	CGG
(CCA)	 AG	6494-6646	GT	AGG
(ACA)	 AG	7710-7799	GT	TGG
(TGT)	 AG	8013-8140	GT	AGG
(GTG)	 AG	8383-8596	GT	AGG
(AAA)	 AG	9437-9654	GT	AGG
(ACG)	 AG	9815-10120	GT	AGG
(CCG)	 AG	10243-10411	GT	CAG
(AGC)	 AG	10664-10754	GT	AGG
(GTA)	 AG	10861-10991	GT	CGG
(GTG)	 AG	11267-11389	GT	TGG
(GAG)	 AG	12949-13088	GT	AGG
(GTG)	 AG	13738-13914	GT	AGG
(ATC)	 AG	14143-14274	GT	AGG
(GTG)	 AG	15085-15180	CA	GAC
add_exon() Sorry, pasa_asmbl_12274.p1 4963-5164-initial-1 is invalid.
-recovered pasa_asmbl_12274.p1, initial, 4963, 5164
-recovered pasa_asmbl_12274.p1, terminal, 15085, 15180
-recovered pasa_asmbl_12274.p1, internal, 4963, 5164
-recovered pasa_asmbl_12274.p1, internal, 5907, 6121
-recovered pasa_asmbl_12274.p1, internal, 6494, 6646
-recovered pasa_asmbl_12274.p1, internal, 7710, 7799
-recovered pasa_asmbl_12274.p1, internal, 8013, 8140
-recovered pasa_asmbl_12274.p1, internal, 8383, 8596
-recovered pasa_asmbl_12274.p1, internal, 9437, 9654
-recovered pasa_asmbl_12274.p1, internal, 9815, 10120
-recovered pasa_asmbl_12274.p1, internal, 10243, 10411
-recovered pasa_asmbl_12274.p1, internal, 10664, 10754
-recovered pasa_asmbl_12274.p1, internal, 10861, 10991
-recovered pasa_asmbl_12274.p1, internal, 11267, 11389
-recovered pasa_asmbl_12274.p1, internal, 12949, 13088
-recovered pasa_asmbl_12274.p1, internal, 13738, 13914
-recovered pasa_asmbl_12274.p1, internal, 14143, 14274
Valid prediction for Augustus_model.g23690.t1
Valid prediction for snap_scaffold_14-snap.2013-T1
Valid prediction for GeneMark_model.60392_t
Valid prediction for snap_scaffold_14-snap.2004-T1
Valid prediction for GeneMark_model.60408_t
Valid prediction for Augustus_model.g23701.t1
Valid prediction for snap_scaffold_14-snap.2027-T1
Valid prediction for GeneMark_model.60403_t
Valid prediction for GeneMark_model.60444_t
Valid prediction for GlimmerHMM_glimmerT_35226-T1
Valid prediction for Augustus_model.g23696.t1
Valid prediction for snap_scaffold_14-snap.2011-T1
Valid prediction for snap_scaffold_14-snap.2017-T1
Valid prediction for GeneMark_model.60410_t
Valid prediction for GlimmerHMM_glimmerT_35217-T1
Valid prediction for GeneMark_model.60435_t
Valid prediction for GeneMark_model.60405_t
Valid prediction for GeneMark_model.60413_t
Valid prediction for snap_scaffold_14-snap.2016-T1
Valid prediction for snap_scaffold_14-snap.2012-T1
Valid prediction for snap_scaffold_14-snap.2006-T1
Valid prediction for snap_scaffold_14-snap.2008-T1
Valid prediction for GlimmerHMM_glimmerT_35207-T1
Valid prediction for GlimmerHMM_glimmerT_35227-T1
Valid prediction for GlimmerHMM_glimmerT_35206-T1
Valid prediction for snap_scaffold_14-snap.2024-T1
Valid prediction for GeneMark_model.60427_t
Valid prediction for GeneMark_model.60389_t
Valid prediction for snap_scaffold_14-snap.2021-T1
Valid prediction for GeneMark_model.60433_t
Valid prediction for snap_scaffold_14-snap.2002-T1
Valid prediction for GeneMark_model.60388_t
Valid prediction for Augustus_model.g23693.t1
Valid prediction for GlimmerHMM_glimmerT_35237-T1
Valid prediction for snap_scaffold_14-snap.2010-T1
Valid prediction for GeneMark_model.60416_t
Valid prediction for GeneMark_model.60429_t
Valid prediction for snap_scaffold_14-snap.2034-T1
Valid prediction for GeneMark_model.60400_t
Valid prediction for GeneMark_model.60431_t
Valid prediction for snap_scaffold_14-snap.1999-T1
Valid prediction for GeneMark_model.60414_t
Valid prediction for snap_scaffold_14-snap.2005-T1
Valid prediction for GlimmerHMM_glimmerT_35216-T1
Valid prediction for GeneMark_model.60393_t
Valid prediction for GlimmerHMM_glimmerT_35221-T1
Valid prediction for GeneMark_model.60442_t
Valid prediction for GlimmerHMM_glimmerT_35234-T1
Valid prediction for snap_scaffold_14-snap.2037-T1
Valid prediction for GeneMark_model.60423_t
Valid prediction for snap_scaffold_14-snap.1998-T1
Valid prediction for GlimmerHMM_glimmerT_35225-T1
Valid prediction for snap_scaffold_14-snap.1993-T1
Valid prediction for snap_scaffold_14-snap.2043-T1
Valid prediction for GlimmerHMM_glimmerT_35218-T1
Valid prediction for GeneMark_model.60446_t
Valid prediction for snap_scaffold_14-snap.2028-T1
Valid prediction for HiQ_model.g23689.t1
Valid prediction for GeneMark_model.60425_t
Valid prediction for GeneMark_model.60420_t
Valid prediction for GlimmerHMM_glimmerT_35220-T1
Valid prediction for pasa_asmbl_12278.p1
Valid prediction for snap_scaffold_14-snap.2042-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_35223-T1
Valid prediction for CodingQuarry_transcript_15748-T1
Valid prediction for snap_scaffold_14-snap.1994-T1
Valid prediction for snap_scaffold_14-snap.2031-T1
Valid prediction for Augustus_model.g23686.t1
Valid prediction for Augustus_model.g23697.t1
Valid prediction for HiQ_model.g23685.t1
Valid prediction for GeneMark_model.60430_t
Valid prediction for snap_scaffold_14-snap.1996-T1
Valid prediction for snap_scaffold_14-snap.2036-T1
Valid prediction for GlimmerHMM_glimmerT_35224-T1
Valid prediction for GeneMark_model.60399_t
Valid prediction for snap_scaffold_14-snap.2035-T1
Valid prediction for GeneMark_model.60409_t
Valid prediction for GeneMark_model.60426_t
Valid prediction for GlimmerHMM_glimmerT_35213-T1
Valid prediction for snap_scaffold_14-snap.2020-T1
Valid prediction for GeneMark_model.60428_t
Valid prediction for snap_scaffold_14-snap.1995-T1
Valid prediction for GeneMark_model.60402_t
Valid prediction for GeneMark_model.60422_t
Valid prediction for GeneMark_model.60396_t
Valid prediction for GeneMark_model.60387_t
Couldn't classify 146731, 146910
Sorry, prediction pasa_asmbl_13373.p1 fails validation.
(GGT)	 AA	146731-146910	GT	AGG
(GTG)	 AG	147058-147108	GT	AGG
(GAA)	 AG	147319-147567	CA	GAC
-recovered pasa_asmbl_13373.p1, terminal, 147319, 147567
-recovered pasa_asmbl_13373.p1, internal, 147058, 147108
Valid prediction for GlimmerHMM_glimmerT_35228-T1
Valid prediction for GeneMark_model.60418_t
Valid prediction for Augustus_model.g23692.t1
Valid prediction for Augustus_model.g23702.t1
Valid prediction for pasa_asmbl_13369.p1
Valid prediction for Augustus_model.g23700.t1
Valid prediction for GeneMark_model.60440_t
Valid prediction for GeneMark_model.60439_t
Valid prediction for GeneMark_model.60432_t
Valid prediction for snap_scaffold_14-snap.2001-T1
Valid prediction for GeneMark_model.60390_t
Valid prediction for Augustus_model.g23691.t1
Valid prediction for pasa_asmbl_13368.p1
Valid prediction for GeneMark_model.60412_t
Valid prediction for GeneMark_model.60441_t
Valid prediction for GeneMark_model.60417_t
Valid prediction for snap_scaffold_14-snap.2032-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_35230-T1
Valid prediction for GlimmerHMM_glimmerT_35233-T1
Valid prediction for snap_scaffold_14-snap.2007-T1
Valid prediction for GeneMark_model.60415_t
Valid prediction for GeneMark_model.60419_t
Valid prediction for GlimmerHMM_glimmerT_35236-T1
Valid prediction for GlimmerHMM_glimmerT_35219-T1
Valid prediction for Augustus_model.g23694.t1
Valid prediction for GeneMark_model.60434_t
Valid prediction for snap_scaffold_14-snap.2018-T1
Valid prediction for snap_scaffold_14-snap.2000-T1
Valid prediction for GeneMark_model.60437_t
Valid prediction for snap_scaffold_14-snap.2014-T1
Valid prediction for snap_scaffold_14-snap.2023-T1
Valid prediction for GlimmerHMM_glimmerT_35222-T1
Valid prediction for GlimmerHMM_glimmerT_35229-T1
Valid prediction for Augustus_model.g23698.t1
Valid prediction for GeneMark_model.60438_t
Valid prediction for GeneMark_model.60407_t
Valid prediction for GeneMark_model.60443_t
Valid prediction for GeneMark_model.60411_t
Valid prediction for snap_scaffold_14-snap.2029-T1
Valid prediction for snap_scaffold_14-snap.2033-T1
Valid prediction for snap_scaffold_14-snap.2038-T1
Valid prediction for Augustus_model.g23688.t1
Valid prediction for snap_scaffold_14-snap.2019-T1
Valid prediction for snap_scaffold_14-snap.2022-T1
Valid prediction for GeneMark_model.60397_t
Valid prediction for GlimmerHMM_glimmerT_35214-T1
Valid prediction for snap_scaffold_14-snap.2040-T1
Valid prediction for GlimmerHMM_glimmerT_35211-T1
Valid prediction for GlimmerHMM_glimmerT_35231-T1
Valid prediction for snap_scaffold_14-snap.1997-T1
Valid prediction for snap_scaffold_14-snap.2039-T1
Valid prediction for Augustus_model.g23695.t1
Valid prediction for snap_scaffold_14-snap.2009-T1
Valid prediction for GeneMark_model.60398_t
Valid prediction for GeneMark_model.60394_t
Valid prediction for GlimmerHMM_glimmerT_35235-T1
Valid prediction for GlimmerHMM_glimmerT_35215-T1
Valid prediction for GlimmerHMM_glimmerT_35209-T1
Valid prediction for GlimmerHMM_glimmerT_35208-T1
Valid prediction for HiQ_model.g23687.t1
Valid prediction for GeneMark_model.60406_t
Valid prediction for GeneMark_model.60391_t
Valid prediction for GlimmerHMM_glimmerT_35205-T1
Valid prediction for GeneMark_model.60404_t
Valid prediction for GeneMark_model.60445_t
Valid prediction for snap_scaffold_14-snap.2025-T1
Valid prediction for Augustus_model.g23699.t1
Valid prediction for snap_scaffold_14-snap.2026-T1
Valid prediction for GlimmerHMM_glimmerT_35232-T1
Valid prediction for GeneMark_model.60424_t
Valid prediction for GeneMark_model.60421_t
Valid prediction for snap_scaffold_14-snap.2003-T1
Valid prediction for CodingQuarry_transcript_15747-T1
Valid prediction for snap_scaffold_14-snap.2015-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 15180, rend_intergenic: 5439  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25571, rend_intergenic: 17895  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50577, rend_intergenic: 44518  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64856, rend_intergenic: 54053  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116869, rend_intergenic: 113802  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121678, rend_intergenic: 116906  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144274, rend_intergenic: 140851  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150874, rend_intergenic: 147671  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156586, rend_intergenic: 152925  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173991, rend_intergenic: 160199  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 181828, rend_intergenic: 177748  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 190362, rend_intergenic: 190154  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 192223, rend_intergenic: 190395  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202077, rend_intergenic: 198914  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 222455, rend_intergenic: 219906  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 230543
-exon list size: 762


building trellis

0.1    
0.3    
0.4    
0.5    
0.7    
0.8    
0.9    
1.0    
1.2    
1.3    
1.4    
1.6    
1.7    
1.8    
2.0    
2.1    
2.2    
2.4    
2.5    
2.6    
2.7    
2.9    
3.0    
3.1    
3.3    
3.4    
3.5    
3.7    
3.8    
3.9    
4.1    
4.2    
4.3    
4.5    
4.6    
4.7    
4.8    
5.0    
5.1    
5.2    
5.4    
5.5    
5.6    
5.8    
5.9    
6.0    
6.2    
6.3    
6.4    
6.5    
6.7    
6.8    
6.9    
7.1    
7.2    
7.3    
7.5    
7.6    
7.7    
7.9    
8.0    
8.1    
8.2    
8.4    
8.5    
8.6    
8.8    
8.9    
9.0    
9.2    
9.3    
9.4    
9.6    
9.7    
9.8    
9.9    
10.1    
10.2    
10.3    
10.5    
10.6    
10.7    
10.9    
11.0    
11.1    
11.3    
11.4    
11.5    
11.6    
11.8    
11.9    
12.0    
12.2    
12.3    
12.4    
12.6    
12.7    
12.8    
13.0    
13.1    
13.2    
13.4    
13.5    
13.6    
13.7    
13.9    
14.0    
14.1    
14.3    
14.4    
14.5    
14.7    
14.8    
14.9    
15.1    
15.2    
15.3    
15.4    
15.6    
15.7    
15.8    
16.0    
16.1    
16.2    
16.4    
16.5    
16.6    
16.8    
16.9    
17.0    
17.1    
17.3    
17.4    
17.5    
17.7    
17.8    
17.9    
18.1    
18.2    
18.3    
18.5    
18.6    
18.7    
18.8    
19.0    
19.1    
19.2    
19.4    
19.5    
19.6    
19.8    
19.9    
20.0    
20.2    
20.3    
20.4    
20.5    
20.7    
20.8    
20.9    
21.1    
21.2    
21.3    
21.5    
21.6    
21.7    
21.9    
22.0    
22.1    
22.3    
22.4    
22.5    
22.6    
22.8    
22.9    
23.0    
23.2    
23.3    
23.4    
23.6    
23.7    
23.8    
24.0    
24.1    
24.2    
24.3    
24.5    
24.6    
24.7    
24.9    
25.0    
25.1    
25.3    
25.4    
25.5    
25.7    
25.8    
25.9    
26.0    
26.2    
26.3    
26.4    
26.6    
26.7    
26.8    
27.0    
27.1    
27.2    
27.4    
27.5    
27.6    
27.7    
27.9    
28.0    
28.1    
28.3    
28.4    
28.5    
28.7    
28.8    
28.9    
29.1    
29.2    
29.3    
29.5    
29.6    
29.7    
29.8    
30.0    
30.1    
30.2    
30.4    
30.5    
30.6    
30.8    
30.9    
31.0    
31.2    
31.3    
31.4    
31.5    
31.7    
31.8    
31.9    
32.1    
32.2    
32.3    
32.5    
32.6    
32.7    
32.9    
33.0    
33.1    
33.2    
33.4    
33.5    
33.6    
33.8    
33.9    
34.0    
34.2    
34.3    
34.4    
34.6    
34.7    
34.8    
34.9    
35.1    
35.2    
35.3    
35.5    
35.6    
35.7    
35.9    
36.0    
36.1    
36.3    
36.4    
36.5    
36.6    
36.8    
36.9    
37.0    
37.2    
37.3    
37.4    
37.6    
37.7    
37.8    
38.0    
38.1    
38.2    
38.4    
38.5    
38.6    
38.7    
38.9    
39.0    
39.1    
39.3    
39.4    
39.5    
39.7    
39.8    
39.9    
40.1    
40.2    
40.3    
40.4    
40.6    
40.7    
40.8    
41.0    
41.1    
41.2    
41.4    
41.5    
41.6    
41.8    
41.9    
42.0    
42.1    
42.3    
42.4    
42.5    
42.7    
42.8    
42.9    
43.1    
43.2    
43.3    
43.5    
43.6    
43.7    
43.8    
44.0    
44.1    
44.2    
44.4    
44.5    
44.6    
44.8    
44.9    
45.0    
45.2    
45.3    
45.4    
45.5    
45.7    
45.8    
45.9    
46.1    
46.2    
46.3    
46.5    
46.6    
46.7    
46.9    
47.0    
47.1    
47.3    
47.4    
47.5    
47.6    
47.8    
47.9    
48.0    
48.2    
48.3    
48.4    
48.6    
48.7    
48.8    
49.0    
49.1    
49.2    
49.3    
49.5    
49.6    
49.7    
49.9    
50.0    
50.1    
50.3    
50.4    
50.5    
50.7    
50.8    
50.9    
51.0    
51.2    
51.3    
51.4    
51.6    
51.7    
51.8    
52.0    
52.1    
52.2    
52.4    
52.5    
52.6    
52.7    
52.9    
53.0    
53.1    
53.3    
53.4    
53.5    
53.7    
53.8    
53.9    
54.1    
54.2    
54.3    
54.5    
54.6    
54.7    
54.8    
55.0    
55.1    
55.2    
55.4    
55.5    
55.6    
55.8    
55.9    
56.0    
56.2    
56.3    
56.4    
56.5    
56.7    
56.8    
56.9    
57.1    
57.2    
57.3    
57.5    
57.6    
57.7    
57.9    
58.0    
58.1    
58.2    
58.4    
58.5    
58.6    
58.8    
58.9    
59.0    
59.2    
59.3    
59.4    
59.6    
59.7    
59.8    
59.9    
60.1    
60.2    
60.3    
60.5    
60.6    
60.7    
60.9    
61.0    
61.1    
61.3    
61.4    
61.5    
61.6    
61.8    
61.9    
62.0    
62.2    
62.3    
62.4    
62.6    
62.7    
62.8    
63.0    
63.1    
63.2    
63.4    
63.5    
63.6    
63.7    
63.9    
64.0    
64.1    
64.3    
64.4    
64.5    
64.7    
64.8    
64.9    
65.1    
65.2    
65.3    
65.4    
65.6    
65.7    
65.8    
66.0    
66.1    
66.2    
66.4    
66.5    
66.6    
66.8    
66.9    
67.0    
67.1    
67.3    
67.4    
67.5    
67.7    
67.8    
67.9    
68.1    
68.2    
68.3    
68.5    
68.6    
68.7    
68.8    
69.0    
69.1    
69.2    
69.4    
69.5    
69.6    
69.8    
69.9    
70.0    
70.2    
70.3    
70.4    
70.5    
70.7    
70.8    
70.9    
71.1    
71.2    
71.3    
71.5    
71.6    
71.7    
71.9    
72.0    
72.1    
72.3    
72.4    
72.5    
72.6    
72.8    
72.9    
73.0    
73.2    
73.3    
73.4    
73.6    
73.7    
73.8    
74.0    
74.1    
74.2    
74.3    
74.5    
74.6    
74.7    
74.9    
75.0    
75.1    
75.3    
75.4    
75.5    
75.7    
75.8    
75.9    
76.0    
76.2    
76.3    
76.4    
76.6    
76.7    
76.8    
77.0    
77.1    
77.2    
77.4    
77.5    
77.6    
77.7    
77.9    
78.0    
78.1    
78.3    
78.4    
78.5    
78.7    
78.8    
78.9    
79.1    
79.2    
79.3    
79.5    
79.6    
79.7    
79.8    
80.0    
80.1    
80.2    
80.4    
80.5    
80.6    
80.8    
80.9    
81.0    
81.2    
81.3    
81.4    
81.5    
81.7    
81.8    
81.9    
82.1    
82.2    
82.3    
82.5    
82.6    
82.7    
82.9    
83.0    
83.1    
83.2    
83.4    
83.5    
83.6    
83.8    
83.9    
84.0    
84.2    
84.3    
84.4    
84.6    
84.7    
84.8    
84.9    
85.1    
85.2    
85.3    
85.5    
85.6    
85.7    
85.9    
86.0    
86.1    
86.3    
86.4    
86.5    
86.6    
86.8    
86.9    
87.0    
87.2    
87.3    
87.4    
87.6    
87.7    
87.8    
88.0    
88.1    
88.2    
88.4    
88.5    
88.6    
88.7    
88.9    
89.0    
89.1    
89.3    
89.4    
89.5    
89.7    
89.8    
89.9    
90.1    
90.2    
90.3    
90.4    
90.6    
90.7    
90.8    
91.0    
91.1    
91.2    
91.4    
91.5    
91.6    
91.8    
91.9    
92.0    
92.1    
92.3    
92.4    
92.5    
92.7    
92.8    
92.9    
93.1    
93.2    
93.3    
93.5    
93.6    
93.7    
93.8    
94.0    
94.1    
94.2    
94.4    
94.5    
94.6    
94.8    
94.9    
95.0    
95.2    
95.3    
95.4    
95.5    
95.7    
95.8    
95.9    
96.1    
96.2    
96.3    
96.5    
96.6    
96.7    
96.9    
97.0    
97.1    
97.3    
97.4    
97.5    
97.6    
97.8    
97.9    
98.0    
98.2    
98.3    
98.4    
98.6    
98.7    
98.8    
99.0    
99.1    
99.2    
99.3    
99.5    
99.6    
99.7    
99.9    
-found 36 predictions from path traversal
Error with prediction: snap lend_intergenic: 15180, rend_intergenic: 5439  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25571, rend_intergenic: 17895  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50577, rend_intergenic: 44518  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64856, rend_intergenic: 54053  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116869, rend_intergenic: 113802  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121678, rend_intergenic: 116906  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144274, rend_intergenic: 140851  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150874, rend_intergenic: 147671  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156586, rend_intergenic: 152925  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173991, rend_intergenic: 160199  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 181828, rend_intergenic: 177748  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 190362, rend_intergenic: 190154  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 192223, rend_intergenic: 190395  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202077, rend_intergenic: 198914  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 222455, rend_intergenic: 219906  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 22 predictions persist after filtering for low support