-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_14/scaffold_14_8249304-8490887 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for HiQ_model.g23588.t1 Valid prediction for GeneMark_model.60046_t Couldn't classify 135821, 135856 Couldn't classify 136156, 136437 Sorry, prediction pasa_asmbl_12212.p1 fails validation. (TCC) CC 135821-135856 GT CGG (CTA) AG 136156-136437 GG AAG Valid prediction for CodingQuarry_transcript_15705-T1 Valid prediction for snap_scaffold_14-snap.1716-T1 Valid prediction for GlimmerHMM_glimmerT_35072-T1 Valid prediction for snap_scaffold_14-snap.1715-T1 Valid prediction for GlimmerHMM_glimmerT_35078-T1 Couldn't classify 55884, 55992 Couldn't classify 56998, 57132 Sorry, prediction pasa_asmbl_12200.p1 fails validation. (GAT) AG 55884-55992 GT AGG (GAG) AG 56241-56332 GT AGG (CAG) AG 56998-57132 CT GAC -recovered pasa_asmbl_12200.p1, internal, 55884, 55992 -recovered pasa_asmbl_12200.p1, internal, 56241, 56332 Valid prediction for GeneMark_model.60075_t Valid prediction for GlimmerHMM_glimmerT_35061-T1 Valid prediction for Augustus_model.g23593.t1 Valid prediction for snap_scaffold_14-snap.1729-T1 Valid prediction for GeneMark_model.60087_t Valid prediction for snap_scaffold_14-snap.1747-T1 Valid prediction for snap_scaffold_14-snap.1763-T1 Valid prediction for snap_scaffold_14-snap.1750-T1 Valid prediction for snap_scaffold_14-snap.1765-T1 Valid prediction for snap_scaffold_14-snap.1754-T1 Valid prediction for GeneMark_model.60066_t Valid prediction for snap_scaffold_14-snap.1759-T1 Valid prediction for Augustus_model.g23566.t1 Valid prediction for GeneMark_model.60064_t Valid prediction for CodingQuarry_transcript_15700-T1 Valid prediction for Augustus_model.g23583.t1 Couldn't classify 140509, 140523 Couldn't classify 141819, 141998 Sorry, prediction pasa_asmbl_12215.p1 fails validation. (GTC) TT 140509-140523 GT AGG (GAC) AG 140772-140939 GT ATG (GCT) AG 141045-141206 GT AGG (GTG) AG 141365-141646 GT AGG (GAC) AG 141819-141998 TG AGT -recovered pasa_asmbl_12215.p1, internal, 140772, 140939 -recovered pasa_asmbl_12215.p1, internal, 141045, 141206 -recovered pasa_asmbl_12215.p1, internal, 141365, 141646 Valid prediction for GeneMark_model.60072_t Valid prediction for GeneMark_model.60054_t Valid prediction for GlimmerHMM_glimmerT_35067-T1 Valid prediction for GeneMark_model.60058_t Valid prediction for CodingQuarry_transcript_15704-T1 Valid prediction for HiQ_model.g23577.t1 Valid prediction for pasa_asmbl_12204.p1 Valid prediction for snap_scaffold_14-snap.1713-T1 Valid prediction for GlimmerHMM_glimmerT_35056-T1 Valid prediction for snap_scaffold_14-snap.1712-T1 Valid prediction for snap_scaffold_14-snap.1718-T1 Valid prediction for Augustus_model.g23581.t1 Valid prediction for GeneMark_model.60060_t Valid prediction for snap_scaffold_14-snap.1722-T1 Valid prediction for snap_scaffold_14-snap.1737-T1 Valid prediction for GeneMark_model.60086_t Valid prediction for GeneMark_model.60051_t Couldn't classify 138920, 138948 Couldn't classify 140091, 140202 Sorry, prediction pasa_asmbl_12214.p1 fails validation. (AAG) AG 138920-138948 GT CTG (GCT) AG 139075-139152 GT GGG (GTT) AG 139292-139359 GT ACG (GGT) AG 139474-139624 GT AGG (GTT) AG 139760-139906 GT AGG (ACG) AG 140091-140202 GG TGG -recovered pasa_asmbl_12214.p1, internal, 138920, 138948 -recovered pasa_asmbl_12214.p1, internal, 139075, 139152 -recovered pasa_asmbl_12214.p1, internal, 139292, 139359 -recovered pasa_asmbl_12214.p1, internal, 139474, 139624 -recovered pasa_asmbl_12214.p1, internal, 139760, 139906 Couldn't classify 129507, 130007 Couldn't classify 131222, 131308 Sorry, prediction pasa_asmbl_12211.p1 fails validation. (GGA) GA 129507-130007 GT AGG (ATG) AG 131222-131308 GC GGG -recovered pasa_asmbl_12211.p1, initial, 131222, 131308 -recovered pasa_asmbl_12211.p1, internal, 131222, 131308 Valid prediction for snap_scaffold_14-snap.1739-T1 Valid prediction for snap_scaffold_14-snap.1757-T1 Valid prediction for GeneMark_model.60050_t Valid prediction for GeneMark_model.60049_t Valid prediction for GeneMark_model.60089_t Valid prediction for snap_scaffold_14-snap.1753-T1 Valid prediction for snap_scaffold_14-snap.1755-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for GeneMark_model.60081_t Valid prediction for pasa_asmbl_12222.p1 Valid prediction for snap_scaffold_14-snap.1742-T1 Valid prediction for Augustus_model.g23580.t1 Valid prediction for Augustus_model.g23573.t1 Valid prediction for HiQ_model.g23568.t1 Valid prediction for Augustus_model.g23572.t1 Valid prediction for pasa_asmbl_12194.p1 Valid prediction for GlimmerHMM_glimmerT_35076-T1 Valid prediction for GeneMark_model.60079_t Valid prediction for snap_scaffold_14-snap.1723-T1 Valid prediction for CodingQuarry_transcript_15707-T1 Valid prediction for GeneMark_model.60092_t Valid prediction for GeneMark_model.60070_t Valid prediction for pasa_asmbl_12218.p1 Couldn't classify 136811, 136855 Couldn't classify 138595, 138634 Sorry, prediction pasa_asmbl_12213.p1 fails validation. (TTA) CT 136811-136855 GT CTG (GAC) AG 136960-137199 GT AGG (TTG) AG 137613-137701 GT AGG (GTA) AG 138595-138634 GA GGG -recovered pasa_asmbl_12213.p1, internal, 136960, 137199 -recovered pasa_asmbl_12213.p1, internal, 137613, 137701 Couldn't classify 143664, 144512 Sorry, prediction pasa_asmbl_12720.p1 fails validation. (TTT) GG 143664-144512 CT ACC Couldn't classify 142944, 143297 Sorry, prediction pasa_asmbl_12217.p3 fails validation. (CAA) CG 142944-143297 CA AAC Valid prediction for GlimmerHMM_glimmerT_35052-T1 Valid prediction for snap_scaffold_14-snap.1734-T1 Valid prediction for GlimmerHMM_glimmerT_35065-T1 Couldn't classify 111492, 111509 Sorry, prediction pasa_asmbl_12209.p1 fails validation. (ATG) AC 110014-110145 GT AGG (GCC) AG 110250-110363 GT AGG (GAG) AG 110488-110587 GT CGG (GTA) AG 110764-110848 GT AGG (TGA) AG 110997-111216 GC TGG (ACC) AG 111309-111401 GT AGG (GTG) AG 111492-111509 GA CGG -recovered pasa_asmbl_12209.p1, initial, 110014, 110145 -recovered pasa_asmbl_12209.p1, internal, 110250, 110363 -recovered pasa_asmbl_12209.p1, internal, 110488, 110587 -recovered pasa_asmbl_12209.p1, internal, 110764, 110848 -recovered pasa_asmbl_12209.p1, internal, 110997, 111216 -recovered pasa_asmbl_12209.p1, internal, 111309, 111401 Valid prediction for GeneMark_model.60068_t Valid prediction for GeneMark_model.60062_t Valid prediction for CodingQuarry_transcript_15717-T1 Valid prediction for GeneMark_model.60077_t Valid prediction for GlimmerHMM_glimmerT_35058-T1 Couldn't classify 108512, 108605 Couldn't classify 109203, 109235 Sorry, prediction pasa_asmbl_12208.p1 fails validation. (GCC) TA 108512-108605 GT CGG (TGA) AG 108722-108849 GT AGG (AGG) AG 109004-109063 GT TGG (AGA) AG 109203-109235 GC GGG -recovered pasa_asmbl_12208.p1, internal, 108722, 108849 -recovered pasa_asmbl_12208.p1, internal, 109004, 109063 -recovered pasa_asmbl_12208.p1, internal, 109203, 109235 Valid prediction for snap_scaffold_14-snap.1751-T1 Valid prediction for snap_scaffold_14-snap.1732-T1 Valid prediction for snap_scaffold_14-snap.1736-T1 Valid prediction for GeneMark_model.60091_t Valid prediction for GlimmerHMM_glimmerT_35064-T1 Valid prediction for GlimmerHMM_glimmerT_35054-T1 Valid prediction for CodingQuarry_transcript_15718-T1 Valid prediction for GlimmerHMM_glimmerT_35079-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for HiQ_model.g23571.t1 Valid prediction for GeneMark_model.60048_t Valid prediction for GeneMark_model.60063_t Valid prediction for snap_scaffold_14-snap.1744-T1 Valid prediction for GeneMark_model.60074_t Valid prediction for GlimmerHMM_glimmerT_35063-T1 Valid prediction for HiQ_model.g23584.t1 Valid prediction for snap_scaffold_14-snap.1758-T1 Valid prediction for pasa_asmbl_13271.p1 Valid prediction for GlimmerHMM_glimmerT_35070-T1 Valid prediction for snap_scaffold_14-snap.1719-T1 Valid prediction for GlimmerHMM_glimmerT_35057-T1 Valid prediction for snap_scaffold_14-snap.1717-T1 Valid prediction for GlimmerHMM_glimmerT_35053-T1 Valid prediction for GlimmerHMM_glimmerT_35073-T1 Valid prediction for Augustus_model.g23590.t1 Valid prediction for GlimmerHMM_glimmerT_35062-T1 Valid prediction for snap_scaffold_14-snap.1761-T1 Valid prediction for pasa_asmbl_13267.p1 Valid prediction for snap_scaffold_14-snap.1752-T1 Valid prediction for GlimmerHMM_glimmerT_35075-T1 Valid prediction for HiQ_model.g23587.t1 Valid prediction for Augustus_model.g23582.t1 Valid prediction for CodingQuarry_transcript_15701-T1 Valid prediction for GeneMark_model.60061_t Valid prediction for GeneMark_model.60090_t Valid prediction for snap_scaffold_14-snap.1743-T1 Valid prediction for snap_scaffold_14-snap.1726-T1 Couldn't classify 237404, 237784 Sorry, prediction pasa_asmbl_13256.p1 fails validation. (CAG) AG 237404-237784 GG GAG Valid prediction for snap_scaffold_14-snap.1740-T1 Valid prediction for CodingQuarry_transcript_15709-T1 Couldn't classify 33815, 33827 Couldn't classify 36720, 37181 Sorry, prediction pasa_asmbl_13302.p1 fails validation. (CAC) TG 33815-33827 GT GGG (AGA) AG 34009-34161 GT GGG (ACT) AG 34627-34790 GT AGG (TTT) AG 34937-35065 GT AGG (TCC) AG 35220-35473 GT AAG (ACC) AG 35807-35975 GT AGG (GTG) AG 36166-36552 GT TGG (GTG) AG 36720-37181 CC TGC -recovered pasa_asmbl_13302.p1, internal, 34009, 34161 -recovered pasa_asmbl_13302.p1, internal, 34627, 34790 -recovered pasa_asmbl_13302.p1, internal, 34937, 35065 -recovered pasa_asmbl_13302.p1, internal, 35220, 35473 -recovered pasa_asmbl_13302.p1, internal, 35807, 35975 -recovered pasa_asmbl_13302.p1, internal, 36166, 36552 Valid prediction for CodingQuarry_transcript_15703-T1 Valid prediction for GeneMark_model.60059_t Valid prediction for snap_scaffold_14-snap.1730-T1 Valid prediction for snap_scaffold_14-snap.1745-T1 Couldn't classify 135803, 135829 Couldn't classify 136643, 136875 Sorry, prediction pasa_asmbl_13278.p1 fails validation. (ACA) GC 135803-135829 GT AAG (GAC) AG 135929-136009 GT AGG (GTG) AG 136240-136299 GT AAG (ACG) AG 136491-136530 GT AGG (CTG) AG 136643-136875 AA AGA -recovered pasa_asmbl_13278.p1, internal, 135929, 136009 -recovered pasa_asmbl_13278.p1, internal, 136240, 136299 -recovered pasa_asmbl_13278.p1, internal, 136491, 136530 Valid prediction for snap_scaffold_14-snap.1714-T1 Valid prediction for snap_scaffold_14-snap.1762-T1 Valid prediction for Augustus_model.g23592.t1 Valid prediction for GeneMark_model.60067_t Valid prediction for Augustus_model.g23574.t1 Valid prediction for snap_scaffold_14-snap.1724-T1 Couldn't classify 37680, 37862 Couldn't classify 39470, 39549 Sorry, prediction pasa_asmbl_13299.p1 fails validation. (ATC) AG 37680-37862 GT AGG (GTC) AG 38000-38194 GT AGG (AGA) AG 38403-38510 GT AGG (GGG) AG 38630-38767 GT AGG (GGG) AG 38878-38970 GT AAG (GAG) AG 39306-39366 GT AGG (AAA) AG 39470-39549 TC CAT -recovered pasa_asmbl_13299.p1, internal, 37680, 37862 -recovered pasa_asmbl_13299.p1, internal, 38000, 38194 -recovered pasa_asmbl_13299.p1, internal, 38403, 38510 -recovered pasa_asmbl_13299.p1, internal, 38630, 38767 -recovered pasa_asmbl_13299.p1, internal, 38878, 38970 -recovered pasa_asmbl_13299.p1, internal, 39306, 39366 Valid prediction for GeneMark_model.60065_t Valid prediction for snap_scaffold_14-snap.1731-T1 Valid prediction for snap_scaffold_14-snap.1711-T1 Valid prediction for CodingQuarry_transcript_15698-T1 Valid prediction for GlimmerHMM_glimmerT_35066-T1 Valid prediction for pasa_asmbl_13295.p1 Valid prediction for GeneMark_model.60053_t Valid prediction for pasa_asmbl_13281.p1 Valid prediction for GeneMark_model.60076_t Couldn't classify 116626, 116925 Couldn't classify 117984, 118024 Sorry, prediction pasa_asmbl_13283.p1 fails validation. (GAC) AG 116626-116925 GT TGG (CTT) AG 117090-117225 GT AGG (CGG) AG 117398-117531 GT AGG (GGA) AG 117795-117888 GT TGG (GTT) AG 117984-118024 GC CAG -recovered pasa_asmbl_13283.p1, internal, 116626, 116925 -recovered pasa_asmbl_13283.p1, internal, 117090, 117225 -recovered pasa_asmbl_13283.p1, internal, 117398, 117531 -recovered pasa_asmbl_13283.p1, internal, 117795, 117888 -recovered pasa_asmbl_13283.p1, internal, 117984, 118024 Valid prediction for snap_scaffold_14-snap.1727-T1 Valid prediction for Augustus_model.g23591.t1 Valid prediction for HiQ_model.g23576.t1 Couldn't classify 227197, 227604 Sorry, prediction pasa_asmbl_13261.p1 fails validation. (GCT) CC 227197-227604 GC GGG Valid prediction for snap_scaffold_14-snap.1746-T1 Couldn't classify 37260, 37706 Sorry, prediction pasa_asmbl_13301.p1 fails validation. (GAA) TG 37260-37706 AC AGA Valid prediction for Augustus_model.g23575.t1 Valid prediction for HiQ_model.g23578.t1 Valid prediction for Augustus_model.g23567.t1 Valid prediction for GlimmerHMM_glimmerT_35071-T1 Valid prediction for snap_scaffold_14-snap.1749-T1 Valid prediction for CodingQuarry_transcript_15715-T1 Valid prediction for Augustus_model.g23585.t1 Valid prediction for CodingQuarry_transcript_15713-T1 Valid prediction for GeneMark_model.60085_t Couldn't classify 238860, 238989 Couldn't classify 241099, 241119 Sorry, prediction pasa_asmbl_13253.p1 fails validation. (AGT) CC 238860-238989 GT TGG (CAG) AG 239098-239297 GT AGG (GGT) AG 239404-239472 GT TCG (GGA) AG 239607-239807 GT AGG (GGT) AG 240555-240683 GT AGG (GTG) AG 241099-241119 CA AGC -recovered pasa_asmbl_13253.p1, internal, 239098, 239297 -recovered pasa_asmbl_13253.p1, internal, 239404, 239472 -recovered pasa_asmbl_13253.p1, internal, 239607, 239807 -recovered pasa_asmbl_13253.p1, internal, 240555, 240683 Valid prediction for CodingQuarry_transcript_15702-T1 Valid prediction for GeneMark_model.60071_t Valid prediction for snap_scaffold_14-snap.1733-T1 Valid prediction for GeneMark_model.60056_t Valid prediction for Augustus_model.g23589.t1 Valid prediction for snap_scaffold_14-snap.1735-T1 Valid prediction for pasa_asmbl_13290.p1 Valid prediction for snap_scaffold_14-snap.1764-T1 Valid prediction for GeneMark_model.60083_t Valid prediction for GeneMark_model.60052_t Couldn't classify 33752, 33826 Sorry, prediction pasa_asmbl_13303.p1 fails validation. (ATG) CA 28110-28233 GT AGG (TCC) AG 31004-31069 GT ACG (CGC) AG 33526-33581 GT GGG (ACT) AG 33752-33826 GG AGG -recovered pasa_asmbl_13303.p1, initial, 28110, 28233 -recovered pasa_asmbl_13303.p1, internal, 31004, 31069 -recovered pasa_asmbl_13303.p1, internal, 33526, 33581 Valid prediction for snap_scaffold_14-snap.1725-T1 Valid prediction for snap_scaffold_14-snap.1738-T1 Sorry, intron length (9) is less than minimum required (10) Valid prediction for Augustus_model.g23586.t1 Couldn't classify 137704, 137715 Couldn't classify 139745, 139779 Sorry, prediction pasa_asmbl_13277.p1 fails validation. (TCC) AC 137704-137715 GT CAG (AAT) AG 137983-138082 GT AGG (GTC) AG 138285-138446 GT AGG (AGG) AG 138625-138830 GT AGG (GAA) AG 138982-139082 GT AAG (GTG) AG 139424-139605 GT GGG (GTA) AG 139745-139779 AG AGA -recovered pasa_asmbl_13277.p1, terminal, 137983, 138082 -recovered pasa_asmbl_13277.p1, internal, 137983, 138082 -recovered pasa_asmbl_13277.p1, internal, 138285, 138446 -recovered pasa_asmbl_13277.p1, internal, 138625, 138830 -recovered pasa_asmbl_13277.p1, internal, 138982, 139082 -recovered pasa_asmbl_13277.p1, internal, 139424, 139605 Valid prediction for GlimmerHMM_glimmerT_35069-T1 Valid prediction for Augustus_model.g23570.t1 Couldn't classify 236165, 236629 Sorry, prediction pasa_asmbl_13257.p1 fails validation. (TCA) AA 236165-236629 GG CAG Valid prediction for CodingQuarry_transcript_15716-T1 Couldn't classify 40186, 40333 Couldn't classify 40368, 40483 Sorry, prediction CodingQuarry_transcript_15719-T1 fails validation. (ATG) CT 40186-40333 TG GCT (GCC) GC 40368-40483 TT AGT Valid prediction for GeneMark_model.60082_t Valid prediction for CodingQuarry_transcript_15712-T1 Valid prediction for GlimmerHMM_glimmerT_35060-T1 Couldn't classify 140001, 140200 Sorry, prediction pasa_asmbl_13275.p1 fails validation. (GGG) GA 140001-140200 GT AGG (CTG) AG 140348-140453 GT ACG (ATG) AG 140566-140674 GT CTG (TGA) AG 140813-140946 GT TGG (GGT) AG 141087-141122 TG AAT -recovered pasa_asmbl_13275.p1, initial, 140566, 140674 -recovered pasa_asmbl_13275.p1, terminal, 141087, 141122 -recovered pasa_asmbl_13275.p1, internal, 140348, 140453 -recovered pasa_asmbl_13275.p1, internal, 140566, 140674 -recovered pasa_asmbl_13275.p1, internal, 140813, 140946 Valid prediction for CodingQuarry_transcript_15714-T1 Valid prediction for GeneMark_model.60073_t Valid prediction for snap_scaffold_14-snap.1720-T1 Valid prediction for GlimmerHMM_glimmerT_35074-T1 Couldn't classify 40186, 40305 Couldn't classify 40334, 40483 Sorry, prediction CodingQuarry_transcript_15720-T1 fails validation. (ATG) CT 40186-40305 AG GCA (TGT) GC 40334-40483 TT AGT Valid prediction for pasa_asmbl_13263.p1 Valid prediction for GeneMark_model.60069_t Valid prediction for snap_scaffold_14-snap.1756-T1 Valid prediction for Augustus_model.g23579.t1 Valid prediction for GlimmerHMM_glimmerT_35055-T1 Couldn't classify 238190, 238531 Sorry, prediction pasa_asmbl_13255.p1 fails validation. (ATG) AG 238190-238531 AA ATA Valid prediction for GeneMark_model.60047_t Valid prediction for GlimmerHMM_glimmerT_35059-T1 Valid prediction for snap_scaffold_14-snap.1760-T1 Valid prediction for GeneMark_model.60088_t Valid prediction for GeneMark_model.60057_t Valid prediction for snap_scaffold_14-snap.1728-T1 Sorry, intron length (8) is less than minimum required (10) Valid prediction for Augustus_model.g23569.t1 Valid prediction for CodingQuarry_transcript_15708-T1 Valid prediction for snap_scaffold_14-snap.1721-T1 Valid prediction for snap_scaffold_14-snap.1741-T1 Valid prediction for snap_scaffold_14-snap.1748-T1 Couldn't classify 39553, 39990 Sorry, prediction pasa_asmbl_13297.p1 fails validation. (CCC) CT 39553-39990 CC AGC Valid prediction for GlimmerHMM_glimmerT_35077-T1 Valid prediction for pasa_asmbl_13284.p1 Valid prediction for GeneMark_model.60055_t Valid prediction for CodingQuarry_transcript_15711-T1 Valid prediction for GlimmerHMM_glimmerT_35068-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 60643, rend_intergenic: 57823 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 72712, rend_intergenic: 71434 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 75793, rend_intergenic: 74033 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 102241, rend_intergenic: 100085 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 145277, rend_intergenic: 131555 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 151685, rend_intergenic: 149245 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 187044, rend_intergenic: 172800 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 189111, rend_intergenic: 187696 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 200468, rend_intergenic: 189182 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 204886, rend_intergenic: 201102 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 208921, rend_intergenic: 208815 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 211892, rend_intergenic: 208929 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 213475, rend_intergenic: 211998 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 224200, rend_intergenic: 213746 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 230031, rend_intergenic: 228168 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 230840, rend_intergenic: 230266 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 233156, rend_intergenic: 230860 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: GlimmerHMM lend_intergenic: 74036, rend_intergenic: 74033 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 241584 -exon list size: 827 building trellis 0.1 0.2 0.4 0.5 0.6 0.7 0.8 1.0 1.1 1.2 1.3 1.4 1.6 1.7 1.8 1.9 2.1 2.2 2.3 2.4 2.5 2.7 2.8 2.9 3.0 3.1 3.3 3.4 3.5 3.6 3.7 3.9 4.0 4.1 4.2 4.3 4.5 4.6 4.7 4.8 4.9 5.1 5.2 5.3 5.4 5.5 5.7 5.8 5.9 6.0 6.2 6.3 6.4 6.5 6.6 6.8 6.9 7.0 7.1 7.2 7.4 7.5 7.6 7.7 7.8 8.0 8.1 8.2 8.3 8.4 8.6 8.7 8.8 8.9 9.0 9.2 9.3 9.4 9.5 9.7 9.8 9.9 10.0 10.1 10.3 10.4 10.5 10.6 10.7 10.9 11.0 11.1 11.2 11.3 11.5 11.6 11.7 11.8 11.9 12.1 12.2 12.3 12.4 12.5 12.7 12.8 12.9 13.0 13.1 13.3 13.4 13.5 13.6 13.8 13.9 14.0 14.1 14.2 14.4 14.5 14.6 14.7 14.8 15.0 15.1 15.2 15.3 15.4 15.6 15.7 15.8 15.9 16.0 16.2 16.3 16.4 16.5 16.6 16.8 16.9 17.0 17.1 17.2 17.4 17.5 17.6 17.7 17.9 18.0 18.1 18.2 18.3 18.5 18.6 18.7 18.8 18.9 19.1 19.2 19.3 19.4 19.5 19.7 19.8 19.9 20.0 20.1 20.3 20.4 20.5 20.6 20.7 20.9 21.0 21.1 21.2 21.4 21.5 21.6 21.7 21.8 22.0 22.1 22.2 22.3 22.4 22.6 22.7 22.8 22.9 23.0 23.2 23.3 23.4 23.5 23.6 23.8 23.9 24.0 24.1 24.2 24.4 24.5 24.6 24.7 24.8 25.0 25.1 25.2 25.3 25.5 25.6 25.7 25.8 25.9 26.1 26.2 26.3 26.4 26.5 26.7 26.8 26.9 27.0 27.1 27.3 27.4 27.5 27.6 27.7 27.9 28.0 28.1 28.2 28.3 28.5 28.6 28.7 28.8 29.0 29.1 29.2 29.3 29.4 29.6 29.7 29.8 29.9 30.0 30.2 30.3 30.4 30.5 30.6 30.8 30.9 31.0 31.1 31.2 31.4 31.5 31.6 31.7 31.8 32.0 32.1 32.2 32.3 32.4 32.6 32.7 32.8 32.9 33.1 33.2 33.3 33.4 33.5 33.7 33.8 33.9 34.0 34.1 34.3 34.4 34.5 34.6 34.7 34.9 35.0 35.1 35.2 35.3 35.5 35.6 35.7 35.8 35.9 36.1 36.2 36.3 36.4 36.6 36.7 36.8 36.9 37.0 37.2 37.3 37.4 37.5 37.6 37.8 37.9 38.0 38.1 38.2 38.4 38.5 38.6 38.7 38.8 39.0 39.1 39.2 39.3 39.4 39.6 39.7 39.8 39.9 40.0 40.2 40.3 40.4 40.5 40.7 40.8 40.9 41.0 41.1 41.3 41.4 41.5 41.6 41.7 41.9 42.0 42.1 42.2 42.3 42.5 42.6 42.7 42.8 42.9 43.1 43.2 43.3 43.4 43.5 43.7 43.8 43.9 44.0 44.1 44.3 44.4 44.5 44.6 44.8 44.9 45.0 45.1 45.2 45.4 45.5 45.6 45.7 45.8 46.0 46.1 46.2 46.3 46.4 46.6 46.7 46.8 46.9 47.0 47.2 47.3 47.4 47.5 47.6 47.8 47.9 48.0 48.1 48.3 48.4 48.5 48.6 48.7 48.9 49.0 49.1 49.2 49.3 49.5 49.6 49.7 49.8 49.9 50.1 50.2 50.3 50.4 50.5 50.7 50.8 50.9 51.0 51.1 51.3 51.4 51.5 51.6 51.7 51.9 52.0 52.1 52.2 52.4 52.5 52.6 52.7 52.8 53.0 53.1 53.2 53.3 53.4 53.6 53.7 53.8 53.9 54.0 54.2 54.3 54.4 54.5 54.6 54.8 54.9 55.0 55.1 55.2 55.4 55.5 55.6 55.7 55.9 56.0 56.1 56.2 56.3 56.5 56.6 56.7 56.8 56.9 57.1 57.2 57.3 57.4 57.5 57.7 57.8 57.9 58.0 58.1 58.3 58.4 58.5 58.6 58.7 58.9 59.0 59.1 59.2 59.3 59.5 59.6 59.7 59.8 60.0 60.1 60.2 60.3 60.4 60.6 60.7 60.8 60.9 61.0 61.2 61.3 61.4 61.5 61.6 61.8 61.9 62.0 62.1 62.2 62.4 62.5 62.6 62.7 62.8 63.0 63.1 63.2 63.3 63.4 63.6 63.7 63.8 63.9 64.1 64.2 64.3 64.4 64.5 64.7 64.8 64.9 65.0 65.1 65.3 65.4 65.5 65.6 65.7 65.9 66.0 66.1 66.2 66.3 66.5 66.6 66.7 66.8 66.9 67.1 67.2 67.3 67.4 67.6 67.7 67.8 67.9 68.0 68.2 68.3 68.4 68.5 68.6 68.8 68.9 69.0 69.1 69.2 69.4 69.5 69.6 69.7 69.8 70.0 70.1 70.2 70.3 70.4 70.6 70.7 70.8 70.9 71.0 71.2 71.3 71.4 71.5 71.7 71.8 71.9 72.0 72.1 72.3 72.4 72.5 72.6 72.7 72.9 73.0 73.1 73.2 73.3 73.5 73.6 73.7 73.8 73.9 74.1 74.2 74.3 74.4 74.5 74.7 74.8 74.9 75.0 75.2 75.3 75.4 75.5 75.6 75.8 75.9 76.0 76.1 76.2 76.4 76.5 76.6 76.7 76.8 77.0 77.1 77.2 77.3 77.4 77.6 77.7 77.8 77.9 78.0 78.2 78.3 78.4 78.5 78.6 78.8 78.9 79.0 79.1 79.3 79.4 79.5 79.6 79.7 79.9 80.0 80.1 80.2 80.3 80.5 80.6 80.7 80.8 80.9 81.1 81.2 81.3 81.4 81.5 81.7 81.8 81.9 82.0 82.1 82.3 82.4 82.5 82.6 82.8 82.9 83.0 83.1 83.2 83.4 83.5 83.6 83.7 83.8 84.0 84.1 84.2 84.3 84.4 84.6 84.7 84.8 84.9 85.0 85.2 85.3 85.4 85.5 85.6 85.8 85.9 86.0 86.1 86.2 86.4 86.5 86.6 86.7 86.9 87.0 87.1 87.2 87.3 87.5 87.6 87.7 87.8 87.9 88.1 88.2 88.3 88.4 88.5 88.7 88.8 88.9 89.0 89.1 89.3 89.4 89.5 89.6 89.7 89.9 90.0 90.1 90.2 90.3 90.5 90.6 90.7 90.8 91.0 91.1 91.2 91.3 91.4 91.6 91.7 91.8 91.9 92.0 92.2 92.3 92.4 92.5 92.6 92.8 92.9 93.0 93.1 93.2 93.4 93.5 93.6 93.7 93.8 94.0 94.1 94.2 94.3 94.5 94.6 94.7 94.8 94.9 95.1 95.2 95.3 95.4 95.5 95.7 95.8 95.9 96.0 96.1 96.3 96.4 96.5 96.6 96.7 96.9 97.0 97.1 97.2 97.3 97.5 97.6 97.7 97.8 97.9 98.1 98.2 98.3 98.4 98.6 98.7 98.8 98.9 99.0 99.2 99.3 99.4 99.5 99.6 99.8 99.9 -found 42 predictions from path traversal Error with prediction: snap lend_intergenic: 60643, rend_intergenic: 57823 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 72712, rend_intergenic: 71434 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 75793, rend_intergenic: 74033 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 102241, rend_intergenic: 100085 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 145277, rend_intergenic: 131555 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 151685, rend_intergenic: 149245 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 187044, rend_intergenic: 172800 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 189111, rend_intergenic: 187696 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 200468, rend_intergenic: 189182 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 204886, rend_intergenic: 201102 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 208921, rend_intergenic: 208815 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 211892, rend_intergenic: 208929 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 213475, rend_intergenic: 211998 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 224200, rend_intergenic: 213746 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 230031, rend_intergenic: 228168 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 230840, rend_intergenic: 230266 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 233156, rend_intergenic: 230860 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: GlimmerHMM lend_intergenic: 74036, rend_intergenic: 74033 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 35 predictions persist after filtering for low support -building DP trellis -building trellis in range 231334 - 241584 -exon list size: 3 building trellis 20.0 40.0 60.0 80.0 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 231471 - 241584 -exon list size: 2 building trellis 25.0 50.0 75.0 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support