-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_14/scaffold_14_8036240-8255564

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.59998_t
Valid prediction for snap_scaffold_14-snap.1677-T1
Valid prediction for Augustus_model.g23540.t1
Valid prediction for GlimmerHMM_glimmerT_35017-T1
Valid prediction for snap_scaffold_14-snap.1687-T1
Valid prediction for snap_scaffold_14-snap.1680-T1
Valid prediction for GeneMark_model.60015_t
Couldn't classify 1564, 1597
Sorry, prediction pasa_asmbl_12179.p1 fails validation.
(CAG)	 GG	1564-1597	GT	TGG
(GTG)	 AG	1713-1806	GT	AGG
(CAC)	 AG	2035-2159	GT	TGG
(GGA)	 AG	3067-3124	GT	AAG
(AAA)	 AG	3342-3494	GT	AGG
(GGT)	 AG	3629-3683	GT	ATG
(AGT)	 AG	3803-3933	GT	CGG
(AGC)	 AG	4046-4102	GT	TTG
(AAT)	 AG	4338-4344	GT	AGG
-recovered pasa_asmbl_12179.p1, terminal, 4338, 4344
-recovered pasa_asmbl_12179.p1, internal, 1713, 1806
-recovered pasa_asmbl_12179.p1, internal, 2035, 2159
-recovered pasa_asmbl_12179.p1, internal, 3067, 3124
-recovered pasa_asmbl_12179.p1, internal, 3342, 3494
-recovered pasa_asmbl_12179.p1, internal, 3629, 3683
-recovered pasa_asmbl_12179.p1, internal, 3803, 3933
-recovered pasa_asmbl_12179.p1, internal, 4046, 4102
-recovered pasa_asmbl_12179.p1, internal, 4338, 4344
Valid prediction for GeneMark_model.60027_t
Valid prediction for snap_scaffold_14-snap.1671-T1
Valid prediction for Augustus_model.g23537.t1
Valid prediction for snap_scaffold_14-snap.1691-T1
Valid prediction for snap_scaffold_14-snap.1696-T1
Valid prediction for GeneMark_model.60034_t
Valid prediction for Augustus_model.g23551.t1
Valid prediction for Augustus_model.g23538.t1
Valid prediction for GlimmerHMM_glimmerT_35019-T1
Valid prediction for GlimmerHMM_glimmerT_35026-T1
Valid prediction for GlimmerHMM_glimmerT_35021-T1
Valid prediction for GeneMark_model.60014_t
Valid prediction for GeneMark_model.60025_t
Valid prediction for GlimmerHMM_glimmerT_35023-T1
Valid prediction for snap_scaffold_14-snap.1674-T1
Valid prediction for GlimmerHMM_glimmerT_35032-T1
Valid prediction for GeneMark_model.60009_t
Valid prediction for HiQ_model.g23561.t1
Valid prediction for GeneMark_model.60044_t
Valid prediction for snap_scaffold_14-snap.1705-T1
Valid prediction for snap_scaffold_14-snap.1689-T1
Valid prediction for GeneMark_model.59994_t
Valid prediction for GeneMark_model.60023_t
Valid prediction for GeneMark_model.60007_t
Valid prediction for GeneMark_model.60017_t
Valid prediction for snap_scaffold_14-snap.1667-T1
Valid prediction for Augustus_model.g23549.t1
Valid prediction for GeneMark_model.60011_t
Valid prediction for GlimmerHMM_glimmerT_35037-T1
Valid prediction for GeneMark_model.60032_t
Valid prediction for GlimmerHMM_glimmerT_35039-T1
Valid prediction for snap_scaffold_14-snap.1694-T1
Valid prediction for snap_scaffold_14-snap.1670-T1
Couldn't classify 7113, 7162
Sorry, prediction pasa_asmbl_12181.p1 fails validation.
(ATG)	 GT	5799-5912	GT	AGG
(GCA)	 AG	6002-6094	GT	AGG
(CTG)	 AG	6181-6345	GT	AGG
(GAC)	 AG	6443-6614	GT	AGG
(GAG)	 AG	6735-6950	GT	AGG
(AGT)	 AG	7113-7162	AG	GCA
-recovered pasa_asmbl_12181.p1, initial, 5799, 5912
-recovered pasa_asmbl_12181.p1, internal, 6002, 6094
-recovered pasa_asmbl_12181.p1, internal, 6181, 6345
-recovered pasa_asmbl_12181.p1, internal, 6443, 6614
-recovered pasa_asmbl_12181.p1, internal, 6735, 6950
Valid prediction for pasa_asmbl_12191.p1
Valid prediction for snap_scaffold_14-snap.1710-T1
Couldn't classify 8011, 8090
Sorry, prediction pasa_asmbl_12182.p1 fails validation.
(GTG)	 GT	8011-8090	GT	GTG
(GCA)	 AG	9278-9345	GT	TGG
(ACG)	 AG	9440-9588	GT	AGG
(AAA)	 AG	9825-9996	GT	GGG
(GTA)	 AG	10081-10194	GT	GAG
(CAG)	 AG	10293-10472	GT	AGG
(GTC)	 AG	10788-10913	GT	GGG
(GTG)	 AG	11280-11398	GG	GAG
-recovered pasa_asmbl_12182.p1, terminal, 11280, 11398
-recovered pasa_asmbl_12182.p1, internal, 9278, 9345
-recovered pasa_asmbl_12182.p1, internal, 9440, 9588
-recovered pasa_asmbl_12182.p1, internal, 9825, 9996
-recovered pasa_asmbl_12182.p1, internal, 10081, 10194
-recovered pasa_asmbl_12182.p1, internal, 10293, 10472
-recovered pasa_asmbl_12182.p1, internal, 10788, 10913
Valid prediction for CodingQuarry_transcript_15693-T1
Valid prediction for Augustus_model.g23546.t1
Valid prediction for snap_scaffold_14-snap.1707-T1
Valid prediction for snap_scaffold_14-snap.1690-T1
Valid prediction for GlimmerHMM_glimmerT_35038-T1
Valid prediction for GeneMark_model.60020_t
Valid prediction for GlimmerHMM_glimmerT_35027-T1
Valid prediction for GeneMark_model.60041_t
Valid prediction for GeneMark_model.59997_t
Valid prediction for GeneMark_model.60000_t
Valid prediction for GeneMark_model.60039_t
Valid prediction for GeneMark_model.59992_t
Valid prediction for snap_scaffold_14-snap.1666-T1
Valid prediction for GeneMark_model.59990_t
Valid prediction for GlimmerHMM_glimmerT_35031-T1
Valid prediction for snap_scaffold_14-snap.1681-T1
Valid prediction for GlimmerHMM_glimmerT_35024-T1
Valid prediction for GeneMark_model.60005_t
Valid prediction for Augustus_model.g23542.t1
Valid prediction for GlimmerHMM_glimmerT_35049-T1
Valid prediction for GeneMark_model.60029_t
Valid prediction for Augustus_model.g23545.t1
Valid prediction for GeneMark_model.60021_t
Valid prediction for GlimmerHMM_glimmerT_35034-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.60038_t
Couldn't classify 2867, 3208
Sorry, prediction pasa_asmbl_13255.p1 fails validation.
(ATG)	 AG	2867-3208	AA	ATA
Couldn't classify 159608, 159727
Sorry, prediction pasa_asmbl_13232.p1 fails validation.
(ACA)	 GC	159608-159727	GT	GGG
(GTA)	 AG	159834-160103	GC	GAG
-recovered pasa_asmbl_13232.p1, terminal, 159834, 160103
-recovered pasa_asmbl_13232.p1, internal, 159834, 160103
Valid prediction for Augustus_model.g23564.t1
Valid prediction for GeneMark_model.59989_t
Valid prediction for GeneMark_model.60042_t
Valid prediction for GeneMark_model.60006_t
Valid prediction for GeneMark_model.60012_t
Valid prediction for Augustus_model.g23539.t1
Valid prediction for CodingQuarry_transcript_15689-T1
Valid prediction for GlimmerHMM_glimmerT_35020-T1
Valid prediction for snap_scaffold_14-snap.1682-T1
Valid prediction for snap_scaffold_14-snap.1698-T1
Valid prediction for snap_scaffold_14-snap.1697-T1
Valid prediction for GlimmerHMM_glimmerT_35036-T1
Valid prediction for snap_scaffold_14-snap.1675-T1
Valid prediction for GeneMark_model.60004_t
Valid prediction for GeneMark_model.60045_t
Valid prediction for snap_scaffold_14-snap.1686-T1
Valid prediction for snap_scaffold_14-snap.1673-T1
Valid prediction for Augustus_model.g23565.t1
Valid prediction for HiQ_model.g23557.t1
Valid prediction for GeneMark_model.60033_t
Valid prediction for GlimmerHMM_glimmerT_35045-T1
Valid prediction for CodingQuarry_transcript_15690-T1
Valid prediction for GeneMark_model.60013_t
Valid prediction for Augustus_model.g23541.t1
Valid prediction for Augustus_model.g23562.t1
Valid prediction for snap_scaffold_14-snap.1679-T1
Valid prediction for HiQ_model.g23563.t1
Valid prediction for GlimmerHMM_glimmerT_35028-T1
Valid prediction for Augustus_model.g23553.t1
Valid prediction for pasa_asmbl_13245.p1
Valid prediction for GlimmerHMM_glimmerT_35040-T1
Valid prediction for GlimmerHMM_glimmerT_35051-T1
Valid prediction for GlimmerHMM_glimmerT_35030-T1
Valid prediction for GlimmerHMM_glimmerT_35047-T1
Valid prediction for snap_scaffold_14-snap.1708-T1
Valid prediction for GeneMark_model.60010_t
Valid prediction for snap_scaffold_14-snap.1703-T1
Valid prediction for GeneMark_model.60002_t
Valid prediction for snap_scaffold_14-snap.1683-T1
Valid prediction for snap_scaffold_14-snap.1699-T1
Valid prediction for GeneMark_model.60018_t
Couldn't classify 183823, 183937
Sorry, prediction pasa_asmbl_13226.p1 fails validation.
(ATG)	 AG	182964-183361	GT	AGG
(GGT)	 AG	183638-183730	GT	AGG
(AGA)	 AG	183823-183937	AT	GCA
-recovered pasa_asmbl_13226.p1, initial, 182964, 183361
-recovered pasa_asmbl_13226.p1, internal, 182964, 183361
-recovered pasa_asmbl_13226.p1, internal, 183638, 183730
Valid prediction for HiQ_model.g23559.t1
Valid prediction for snap_scaffold_14-snap.1702-T1
Valid prediction for GeneMark_model.60031_t
Valid prediction for CodingQuarry_transcript_15691-T1
Valid prediction for snap_scaffold_14-snap.1692-T1
Valid prediction for Augustus_model.g23544.t1
Valid prediction for snap_scaffold_14-snap.1676-T1
Valid prediction for GeneMark_model.60019_t
Valid prediction for GlimmerHMM_glimmerT_35035-T1
Valid prediction for Augustus_model.g23555.t1
Valid prediction for snap_scaffold_14-snap.1706-T1
Valid prediction for snap_scaffold_14-snap.1688-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for CodingQuarry_transcript_15694-T1
Valid prediction for CodingQuarry_transcript_15697-T1
Valid prediction for GlimmerHMM_glimmerT_35018-T1
Valid prediction for snap_scaffold_14-snap.1693-T1
Valid prediction for GeneMark_model.60026_t
Valid prediction for Augustus_model.g23554.t1
Valid prediction for GlimmerHMM_glimmerT_35046-T1
Valid prediction for GeneMark_model.60030_t
Valid prediction for GlimmerHMM_glimmerT_35048-T1
Valid prediction for snap_scaffold_14-snap.1704-T1
Valid prediction for GlimmerHMM_glimmerT_35044-T1
Valid prediction for pasa_asmbl_13243.p1
Valid prediction for Augustus_model.g23547.t1
Valid prediction for Augustus_model.g23543.t1
Valid prediction for GeneMark_model.60003_t
Valid prediction for GlimmerHMM_glimmerT_35025-T1
Valid prediction for GeneMark_model.59996_t
Valid prediction for snap_scaffold_14-snap.1701-T1
Couldn't classify 842, 1306
Sorry, prediction pasa_asmbl_13257.p1 fails validation.
(TCA)	 AA	842-1306	GG	CAG
Couldn't classify 3537, 3666
Couldn't classify 5776, 5796
Sorry, prediction pasa_asmbl_13253.p1 fails validation.
(AGT)	 CC	3537-3666	GT	TGG
(CAG)	 AG	3775-3974	GT	AGG
(GGT)	 AG	4081-4149	GT	TCG
(GGA)	 AG	4284-4484	GT	AGG
(GGT)	 AG	5232-5360	GT	AGG
(GTG)	 AG	5776-5796	CA	AGC
-recovered pasa_asmbl_13253.p1, internal, 3775, 3974
-recovered pasa_asmbl_13253.p1, internal, 4081, 4149
-recovered pasa_asmbl_13253.p1, internal, 4284, 4484
-recovered pasa_asmbl_13253.p1, internal, 5232, 5360
Valid prediction for snap_scaffold_14-snap.1669-T1
Couldn't classify 13930, 14158
Couldn't classify 15112, 15126
Sorry, prediction pasa_asmbl_13250.p1 fails validation.
(ATC)	 AG	13930-14158	GT	CGG
(AGC)	 AG	14449-14619	GT	TTG
(CTG)	 AG	14838-14986	GT	TTG
(GGG)	 AG	15112-15126	GC	CAG
-recovered pasa_asmbl_13250.p1, internal, 13930, 14158
-recovered pasa_asmbl_13250.p1, internal, 14449, 14619
-recovered pasa_asmbl_13250.p1, internal, 14838, 14986
-recovered pasa_asmbl_13250.p1, internal, 15112, 15126
Valid prediction for snap_scaffold_14-snap.1668-T1
Valid prediction for GeneMark_model.60037_t
Valid prediction for GeneMark_model.59991_t
Couldn't classify 45723, 45779
Sorry, prediction pasa_asmbl_13235.p1 fails validation.
(CGT)	 CA	45723-45779	GT	AGG
(GTG)	 AG	46135-46271	GT	ATG
(TCC)	 AG	46500-46638	GT	AGG
(GTG)	 AG	47036-47184	GT	AAG
(GGA)	 AG	47584-47685	GT	TGG
(CAT)	 AG	48019-48112	GT	TGG
(AAA)	 AG	48224-48349	GT	AGG
(AAG)	 AG	48466-48588	GT	AGG
(ACA)	 AG	48740-48886	TG	AAT
-recovered pasa_asmbl_13235.p1, terminal, 48740, 48886
-recovered pasa_asmbl_13235.p1, internal, 46135, 46271
-recovered pasa_asmbl_13235.p1, internal, 46500, 46638
-recovered pasa_asmbl_13235.p1, internal, 47036, 47184
-recovered pasa_asmbl_13235.p1, internal, 47584, 47685
-recovered pasa_asmbl_13235.p1, internal, 48019, 48112
-recovered pasa_asmbl_13235.p1, internal, 48224, 48349
-recovered pasa_asmbl_13235.p1, internal, 48466, 48588
Couldn't classify 159608, 159727
Sorry, prediction pasa_asmbl_13229.p1 fails validation.
(ACA)	 GC	159608-159727	GT	GGG
(GTA)	 AG	159834-160086	GT	AGG
(GCA)	 AG	161771-161850	AC	GAA
-recovered pasa_asmbl_13229.p1, terminal, 161771, 161850
-recovered pasa_asmbl_13229.p1, internal, 159834, 160086
Couldn't classify 6895, 7012
Couldn't classify 9035, 9464
Sorry, prediction pasa_asmbl_13252.p1 fails validation.
(CCA)	 CA	6895-7012	GT	AGG
(AGT)	 AG	7305-7448	GT	TGG
(ATT)	 AG	7533-7625	GT	AGG
(CAA)	 AG	7933-8160	GT	TGG
(GCA)	 AG	8627-8697	GT	AGG
(ATT)	 AG	8785-8924	GT	ATG
(GTG)	 AG	9035-9464	GC	GGG
-recovered pasa_asmbl_13252.p1, internal, 7305, 7448
-recovered pasa_asmbl_13252.p1, internal, 7533, 7625
-recovered pasa_asmbl_13252.p1, internal, 7933, 8160
-recovered pasa_asmbl_13252.p1, internal, 8627, 8697
-recovered pasa_asmbl_13252.p1, internal, 8785, 8924
-recovered pasa_asmbl_13252.p1, internal, 9035, 9464
Valid prediction for GlimmerHMM_glimmerT_35050-T1
Valid prediction for snap_scaffold_14-snap.1700-T1
Valid prediction for GeneMark_model.60008_t
Valid prediction for GeneMark_model.59999_t
Valid prediction for Augustus_model.g23548.t1
Valid prediction for CodingQuarry_transcript_15698-T1
Valid prediction for GeneMark_model.59993_t
Valid prediction for Augustus_model.g23552.t1
Valid prediction for GlimmerHMM_glimmerT_35041-T1
Valid prediction for GeneMark_model.60040_t
Valid prediction for snap_scaffold_14-snap.1709-T1
Valid prediction for GeneMark_model.60024_t
Valid prediction for snap_scaffold_14-snap.1695-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_35022-T1
Valid prediction for GeneMark_model.60043_t
Couldn't classify 2081, 2461
Sorry, prediction pasa_asmbl_13256.p1 fails validation.
(CAG)	 AG	2081-2461	GG	GAG
Valid prediction for GeneMark_model.60028_t
Valid prediction for snap_scaffold_14-snap.1684-T1
Valid prediction for HiQ_model.g23560.t1
Valid prediction for snap_scaffold_14-snap.1665-T1
Valid prediction for CodingQuarry_transcript_15696-T1
Valid prediction for Augustus_model.g23550.t1
Valid prediction for snap_scaffold_14-snap.1711-T1
Valid prediction for HiQ_model.g23558.t1
Valid prediction for HiQ_model.g23556.t1
Valid prediction for GeneMark_model.60001_t
Valid prediction for GlimmerHMM_glimmerT_35029-T1
Valid prediction for pasa_asmbl_13240.p1
Valid prediction for GeneMark_model.60022_t
Valid prediction for snap_scaffold_14-snap.1678-T1
Valid prediction for GlimmerHMM_glimmerT_35033-T1
Couldn't classify 184171, 184521
Sorry, prediction pasa_asmbl_13225.p2 fails validation.
(CTG)	 CC	184171-184521	GC	CCG
Valid prediction for snap_scaffold_14-snap.1672-T1
Valid prediction for GeneMark_model.60036_t
Valid prediction for GlimmerHMM_glimmerT_35043-T1
Valid prediction for GeneMark_model.59995_t
Valid prediction for GlimmerHMM_glimmerT_35042-T1
Valid prediction for snap_scaffold_14-snap.1685-T1
Valid prediction for GeneMark_model.60035_t
Valid prediction for CodingQuarry_transcript_15688-T1
Valid prediction for GeneMark_model.60016_t
Valid prediction for CodingQuarry_transcript_15695-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 190586, rend_intergenic: 190583  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22810, rend_intergenic: 20306  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32598, rend_intergenic: 25977  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47740, rend_intergenic: 41710  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56374, rend_intergenic: 51737  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61293, rend_intergenic: 56381  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74715, rend_intergenic: 71840  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92492, rend_intergenic: 77272  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124198, rend_intergenic: 120911  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143395, rend_intergenic: 131097  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146169, rend_intergenic: 143740  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153747, rend_intergenic: 148971  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155324, rend_intergenic: 153909  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165095, rend_intergenic: 155613  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 200865, rend_intergenic: 196778  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 215929, rend_intergenic: 209251  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 219325
-exon list size: 837


building trellis

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21.7    
21.8    
21.9    
22.1    
22.2    
22.3    
22.4    
22.5    
22.6    
22.8    
22.9    
23.0    
23.1    
23.2    
23.4    
23.5    
23.6    
23.7    
23.8    
24.0    
24.1    
24.2    
24.3    
24.4    
24.6    
24.7    
24.8    
24.9    
25.0    
25.1    
25.3    
25.4    
25.5    
25.6    
25.7    
25.9    
26.0    
26.1    
26.2    
26.3    
26.5    
26.6    
26.7    
26.8    
26.9    
27.1    
27.2    
27.3    
27.4    
27.5    
27.7    
27.8    
27.9    
28.0    
28.1    
28.2    
28.4    
28.5    
28.6    
28.7    
28.8    
29.0    
29.1    
29.2    
29.3    
29.4    
29.6    
29.7    
29.8    
29.9    
30.0    
30.2    
30.3    
30.4    
30.5    
30.6    
30.8    
30.9    
31.0    
31.1    
31.2    
31.3    
31.5    
31.6    
31.7    
31.8    
31.9    
32.1    
32.2    
32.3    
32.4    
32.5    
32.7    
32.8    
32.9    
33.0    
33.1    
33.3    
33.4    
33.5    
33.6    
33.7    
33.8    
34.0    
34.1    
34.2    
34.3    
34.4    
34.6    
34.7    
34.8    
34.9    
35.0    
35.2    
35.3    
35.4    
35.5    
35.6    
35.8    
35.9    
36.0    
36.1    
36.2    
36.4    
36.5    
36.6    
36.7    
36.8    
36.9    
37.1    
37.2    
37.3    
37.4    
37.5    
37.7    
37.8    
37.9    
38.0    
38.1    
38.3    
38.4    
38.5    
38.6    
38.7    
38.9    
39.0    
39.1    
39.2    
39.3    
39.5    
39.6    
39.7    
39.8    
39.9    
40.0    
40.2    
40.3    
40.4    
40.5    
40.6    
40.8    
40.9    
41.0    
41.1    
41.2    
41.4    
41.5    
41.6    
41.7    
41.8    
42.0    
42.1    
42.2    
42.3    
42.4    
42.6    
42.7    
42.8    
42.9    
43.0    
43.1    
43.3    
43.4    
43.5    
43.6    
43.7    
43.9    
44.0    
44.1    
44.2    
44.3    
44.5    
44.6    
44.7    
44.8    
44.9    
45.1    
45.2    
45.3    
45.4    
45.5    
45.6    
45.8    
45.9    
46.0    
46.1    
46.2    
46.4    
46.5    
46.6    
46.7    
46.8    
47.0    
47.1    
47.2    
47.3    
47.4    
47.6    
47.7    
47.8    
47.9    
48.0    
48.2    
48.3    
48.4    
48.5    
48.6    
48.7    
48.9    
49.0    
49.1    
49.2    
49.3    
49.5    
49.6    
49.7    
49.8    
49.9    
50.1    
50.2    
50.3    
50.4    
50.5    
50.7    
50.8    
50.9    
51.0    
51.1    
51.3    
51.4    
51.5    
51.6    
51.7    
51.8    
52.0    
52.1    
52.2    
52.3    
52.4    
52.6    
52.7    
52.8    
52.9    
53.0    
53.2    
53.3    
53.4    
53.5    
53.6    
53.8    
53.9    
54.0    
54.1    
54.2    
54.4    
54.5    
54.6    
54.7    
54.8    
54.9    
55.1    
55.2    
55.3    
55.4    
55.5    
55.7    
55.8    
55.9    
56.0    
56.1    
56.3    
56.4    
56.5    
56.6    
56.7    
56.9    
57.0    
57.1    
57.2    
57.3    
57.4    
57.6    
57.7    
57.8    
57.9    
58.0    
58.2    
58.3    
58.4    
58.5    
58.6    
58.8    
58.9    
59.0    
59.1    
59.2    
59.4    
59.5    
59.6    
59.7    
59.8    
60.0    
60.1    
60.2    
60.3    
60.4    
60.5    
60.7    
60.8    
60.9    
61.0    
61.1    
61.3    
61.4    
61.5    
61.6    
61.7    
61.9    
62.0    
62.1    
62.2    
62.3    
62.5    
62.6    
62.7    
62.8    
62.9    
63.1    
63.2    
63.3    
63.4    
63.5    
63.6    
63.8    
63.9    
64.0    
64.1    
64.2    
64.4    
64.5    
64.6    
64.7    
64.8    
65.0    
65.1    
65.2    
65.3    
65.4    
65.6    
65.7    
65.8    
65.9    
66.0    
66.2    
66.3    
66.4    
66.5    
66.6    
66.7    
66.9    
67.0    
67.1    
67.2    
67.3    
67.5    
67.6    
67.7    
67.8    
67.9    
68.1    
68.2    
68.3    
68.4    
68.5    
68.7    
68.8    
68.9    
69.0    
69.1    
69.2    
69.4    
69.5    
69.6    
69.7    
69.8    
70.0    
70.1    
70.2    
70.3    
70.4    
70.6    
70.7    
70.8    
70.9    
71.0    
71.2    
71.3    
71.4    
71.5    
71.6    
71.8    
71.9    
72.0    
72.1    
72.2    
72.3    
72.5    
72.6    
72.7    
72.8    
72.9    
73.1    
73.2    
73.3    
73.4    
73.5    
73.7    
73.8    
73.9    
74.0    
74.1    
74.3    
74.4    
74.5    
74.6    
74.7    
74.9    
75.0    
75.1    
75.2    
75.3    
75.4    
75.6    
75.7    
75.8    
75.9    
76.0    
76.2    
76.3    
76.4    
76.5    
76.6    
76.8    
76.9    
77.0    
77.1    
77.2    
77.4    
77.5    
77.6    
77.7    
77.8    
77.9    
78.1    
78.2    
78.3    
78.4    
78.5    
78.7    
78.8    
78.9    
79.0    
79.1    
79.3    
79.4    
79.5    
79.6    
79.7    
79.9    
80.0    
80.1    
80.2    
80.3    
80.5    
80.6    
80.7    
80.8    
80.9    
81.0    
81.2    
81.3    
81.4    
81.5    
81.6    
81.8    
81.9    
82.0    
82.1    
82.2    
82.4    
82.5    
82.6    
82.7    
82.8    
83.0    
83.1    
83.2    
83.3    
83.4    
83.6    
83.7    
83.8    
83.9    
84.0    
84.1    
84.3    
84.4    
84.5    
84.6    
84.7    
84.9    
85.0    
85.1    
85.2    
85.3    
85.5    
85.6    
85.7    
85.8    
85.9    
86.1    
86.2    
86.3    
86.4    
86.5    
86.7    
86.8    
86.9    
87.0    
87.1    
87.2    
87.4    
87.5    
87.6    
87.7    
87.8    
88.0    
88.1    
88.2    
88.3    
88.4    
88.6    
88.7    
88.8    
88.9    
89.0    
89.2    
89.3    
89.4    
89.5    
89.6    
89.7    
89.9    
90.0    
90.1    
90.2    
90.3    
90.5    
90.6    
90.7    
90.8    
90.9    
91.1    
91.2    
91.3    
91.4    
91.5    
91.7    
91.8    
91.9    
92.0    
92.1    
92.3    
92.4    
92.5    
92.6    
92.7    
92.8    
93.0    
93.1    
93.2    
93.3    
93.4    
93.6    
93.7    
93.8    
93.9    
94.0    
94.2    
94.3    
94.4    
94.5    
94.6    
94.8    
94.9    
95.0    
95.1    
95.2    
95.4    
95.5    
95.6    
95.7    
95.8    
95.9    
96.1    
96.2    
96.3    
96.4    
96.5    
96.7    
96.8    
96.9    
97.0    
97.1    
97.3    
97.4    
97.5    
97.6    
97.7    
97.9    
98.0    
98.1    
98.2    
98.3    
98.5    
98.6    
98.7    
98.8    
98.9    
99.0    
99.2    
99.3    
99.4    
99.5    
99.6    
99.8    
99.9    
-found 47 predictions from path traversal
Error with prediction: GlimmerHMM lend_intergenic: 190586, rend_intergenic: 190583  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22810, rend_intergenic: 20306  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32598, rend_intergenic: 25977  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47740, rend_intergenic: 41710  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56374, rend_intergenic: 51737  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61293, rend_intergenic: 56381  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74715, rend_intergenic: 71840  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92492, rend_intergenic: 77272  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124198, rend_intergenic: 120911  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143395, rend_intergenic: 131097  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146169, rend_intergenic: 143740  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153747, rend_intergenic: 148971  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155324, rend_intergenic: 153909  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165095, rend_intergenic: 155613  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 200865, rend_intergenic: 196778  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 215929, rend_intergenic: 209251  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 31 predictions persist after filtering for low support