-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_14/scaffold_14_6962452-7151856

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_34870-T1
Valid prediction for snap_scaffold_14-snap.1475-T1
Valid prediction for snap_scaffold_14-snap.1446-T1
Valid prediction for Augustus_model.g23450.t1
Valid prediction for GlimmerHMM_glimmerT_34877-T1
Valid prediction for GeneMark_model.59723_t
Valid prediction for snap_scaffold_14-snap.1463-T1
Valid prediction for GlimmerHMM_glimmerT_34883-T1
Valid prediction for HiQ_model.g23443.t1
Valid prediction for GeneMark_model.59708_t
Valid prediction for snap_scaffold_14-snap.1444-T1
Valid prediction for GeneMark_model.59688_t
Valid prediction for CodingQuarry_transcript_15647-T1
Valid prediction for snap_scaffold_14-snap.1457-T1
Valid prediction for snap_scaffold_14-snap.1480-T1
Valid prediction for GeneMark_model.59698_t
Valid prediction for HiQ_model.g23444.t1
Valid prediction for GeneMark_model.59713_t
Valid prediction for pasa_asmbl_12103.p1
Valid prediction for GeneMark_model.59715_t
Valid prediction for GlimmerHMM_glimmerT_34880-T1
Valid prediction for snap_scaffold_14-snap.1486-T1
Valid prediction for GeneMark_model.59694_t
Valid prediction for GlimmerHMM_glimmerT_34872-T1
Valid prediction for snap_scaffold_14-snap.1455-T1
Valid prediction for GeneMark_model.59690_t
Valid prediction for snap_scaffold_14-snap.1485-T1
Valid prediction for snap_scaffold_14-snap.1468-T1
Valid prediction for GeneMark_model.59729_t
Valid prediction for GlimmerHMM_glimmerT_34866-T1
Valid prediction for GeneMark_model.59702_t
Valid prediction for snap_scaffold_14-snap.1484-T1
Valid prediction for GeneMark_model.59700_t
Valid prediction for GlimmerHMM_glimmerT_34871-T1
Valid prediction for snap_scaffold_14-snap.1483-T1
Valid prediction for GeneMark_model.59717_t
Valid prediction for GlimmerHMM_glimmerT_34882-T1
Valid prediction for snap_scaffold_14-snap.1466-T1
Valid prediction for snap_scaffold_14-snap.1464-T1
Valid prediction for GeneMark_model.59686_t
Valid prediction for snap_scaffold_14-snap.1459-T1
Valid prediction for GeneMark_model.59706_t
Valid prediction for GeneMark_model.59710_t
Valid prediction for Augustus_model.g23439.t1
Valid prediction for GeneMark_model.59721_t
Valid prediction for snap_scaffold_14-snap.1469-T1
Valid prediction for snap_scaffold_14-snap.1481-T1
Valid prediction for pasa_asmbl_12102.p1
Valid prediction for snap_scaffold_14-snap.1478-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_14-snap.1487-T1
Valid prediction for snap_scaffold_14-snap.1443-T1
Valid prediction for GeneMark_model.59719_t
Valid prediction for GeneMark_model.59725_t
Valid prediction for GlimmerHMM_glimmerT_34876-T1
Valid prediction for GeneMark_model.59685_t
Valid prediction for snap_scaffold_14-snap.1472-T1
Valid prediction for GeneMark_model.59712_t
Valid prediction for GeneMark_model.59695_t
Valid prediction for snap_scaffold_14-snap.1479-T1
Valid prediction for snap_scaffold_14-snap.1450-T1
Valid prediction for GeneMark_model.59711_t
Valid prediction for GeneMark_model.59703_t
Valid prediction for GeneMark_model.59727_t
Valid prediction for snap_scaffold_14-snap.1447-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.59699_t
Valid prediction for GeneMark_model.59728_t
Valid prediction for Augustus_model.g23447.t1
Valid prediction for GlimmerHMM_glimmerT_34862-T1
Valid prediction for snap_scaffold_14-snap.1465-T1
Valid prediction for Augustus_model.g23445.t1
Valid prediction for CodingQuarry_transcript_15645-T1
Valid prediction for GeneMark_model.59692_t
Valid prediction for snap_scaffold_14-snap.1461-T1
Valid prediction for snap_scaffold_14-snap.1476-T1
Valid prediction for HiQ_model.g23442.t1
Valid prediction for CodingQuarry_transcript_15646-T1
Valid prediction for Augustus_model.g23449.t1
Valid prediction for GeneMark_model.59718_t
Valid prediction for snap_scaffold_14-snap.1451-T1
Valid prediction for Augustus_model.g23441.t1
Valid prediction for GeneMark_model.59696_t
Valid prediction for GeneMark_model.59720_t
Valid prediction for GeneMark_model.59705_t
Valid prediction for GlimmerHMM_glimmerT_34865-T1
Valid prediction for snap_scaffold_14-snap.1452-T1
Valid prediction for GlimmerHMM_glimmerT_34875-T1
Valid prediction for GeneMark_model.59730_t
Valid prediction for HiQ_model.g23438.t1
Valid prediction for GeneMark_model.59687_t
Valid prediction for GeneMark_model.59701_t
Valid prediction for GeneMark_model.59724_t
Valid prediction for GlimmerHMM_glimmerT_34869-T1
Valid prediction for snap_scaffold_14-snap.1477-T1
Valid prediction for GeneMark_model.59716_t
Valid prediction for GlimmerHMM_glimmerT_34881-T1
Valid prediction for GeneMark_model.59683_t
Valid prediction for GeneMark_model.59726_t
Valid prediction for GlimmerHMM_glimmerT_34873-T1
Valid prediction for GeneMark_model.59722_t
Valid prediction for GlimmerHMM_glimmerT_34868-T1
Valid prediction for Augustus_model.g23440.t1
Valid prediction for GlimmerHMM_glimmerT_34864-T1
Valid prediction for snap_scaffold_14-snap.1467-T1
Valid prediction for GlimmerHMM_glimmerT_34863-T1
Valid prediction for Augustus_model.g23446.t1
Valid prediction for GeneMark_model.59691_t
Valid prediction for Augustus_model.g23435.t1
Valid prediction for snap_scaffold_14-snap.1482-T1
Valid prediction for GeneMark_model.59689_t
Valid prediction for pasa_asmbl_13159.p1
Valid prediction for snap_scaffold_14-snap.1449-T1
Valid prediction for GlimmerHMM_glimmerT_34861-T1
Valid prediction for GeneMark_model.59697_t
Valid prediction for Augustus_model.g23436.t1
Valid prediction for HiQ_model.g23437.t1
Valid prediction for snap_scaffold_14-snap.1445-T1
Valid prediction for snap_scaffold_14-snap.1460-T1
Valid prediction for snap_scaffold_14-snap.1456-T1
Valid prediction for GeneMark_model.59684_t
Valid prediction for snap_scaffold_14-snap.1470-T1
Valid prediction for snap_scaffold_14-snap.1474-T1
Valid prediction for GeneMark_model.59693_t
Valid prediction for Augustus_model.g23451.t1
Valid prediction for GeneMark_model.59707_t
Valid prediction for GlimmerHMM_glimmerT_34878-T1
Valid prediction for snap_scaffold_14-snap.1448-T1
Valid prediction for GeneMark_model.59714_t
Valid prediction for snap_scaffold_14-snap.1454-T1
Valid prediction for GlimmerHMM_glimmerT_34884-T1
Valid prediction for CodingQuarry_transcript_15644-T1
Valid prediction for snap_scaffold_14-snap.1458-T1
Valid prediction for snap_scaffold_14-snap.1473-T1
Valid prediction for GlimmerHMM_glimmerT_34867-T1
Valid prediction for GeneMark_model.59709_t
Valid prediction for GlimmerHMM_glimmerT_34879-T1
Valid prediction for GlimmerHMM_glimmerT_34874-T1
Valid prediction for snap_scaffold_14-snap.1462-T1
Valid prediction for snap_scaffold_14-snap.1453-T1
Valid prediction for GeneMark_model.59704_t
Valid prediction for pasa_asmbl_13155.p1
Valid prediction for Augustus_model.g23448.t1
Valid prediction for snap_scaffold_14-snap.1471-T1
Valid prediction for pasa_asmbl_13157.p2

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5941, rend_intergenic: 5276  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 11458, rend_intergenic: 5979  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16315, rend_intergenic: 12974  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23391, rend_intergenic: 19233  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37981, rend_intergenic: 31113  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63846, rend_intergenic: 59766  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67996, rend_intergenic: 64033  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84755, rend_intergenic: 80408  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94939, rend_intergenic: 90840  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97180, rend_intergenic: 96268  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102910, rend_intergenic: 97358  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114142, rend_intergenic: 108224  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117193, rend_intergenic: 115107  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123600, rend_intergenic: 117298  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135058, rend_intergenic: 132384  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147410, rend_intergenic: 136190  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151737, rend_intergenic: 147932  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187666, rend_intergenic: 152747  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 189405
-exon list size: 737


building trellis

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99.7    
99.9    
-found 25 predictions from path traversal
Error with prediction: snap lend_intergenic: 5941, rend_intergenic: 5276  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 11458, rend_intergenic: 5979  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16315, rend_intergenic: 12974  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23391, rend_intergenic: 19233  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37981, rend_intergenic: 31113  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63846, rend_intergenic: 59766  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67996, rend_intergenic: 64033  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84755, rend_intergenic: 80408  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94939, rend_intergenic: 90840  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97180, rend_intergenic: 96268  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102910, rend_intergenic: 97358  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114142, rend_intergenic: 108224  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117193, rend_intergenic: 115107  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123600, rend_intergenic: 117298  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135058, rend_intergenic: 132384  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147410, rend_intergenic: 136190  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151737, rend_intergenic: 147932  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187666, rend_intergenic: 152747  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 14 predictions persist after filtering for low support