-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_14/scaffold_14_569189-861245

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.58150_t
Valid prediction for snap_scaffold_14-snap.112-T1
Valid prediction for GlimmerHMM_glimmerT_33938-T1
Valid prediction for GeneMark_model.58151_t
Valid prediction for GeneMark_model.58146_t
Valid prediction for GlimmerHMM_glimmerT_33934-T1
Valid prediction for GeneMark_model.58161_t
Valid prediction for GeneMark_model.58152_t
Valid prediction for snap_scaffold_14-snap.110-T1
Valid prediction for GeneMark_model.58147_t
Valid prediction for GeneMark_model.58160_t
Valid prediction for HiQ_model.g22792.t1
Valid prediction for snap_scaffold_14-snap.130-T1
Valid prediction for snap_scaffold_14-snap.111-T1
Valid prediction for GeneMark_model.58154_t
Couldn't classify 5492, 6485
Sorry, prediction pasa_asmbl_11736.p1 fails validation.
(GGC)	 TA	5492-6485	GT	AGG
(GAT)	 AG	6623-6768	GT	AGG
(CGA)	 AG	7642-7662	GT	AAG
-recovered pasa_asmbl_11736.p1, terminal, 7642, 7662
-recovered pasa_asmbl_11736.p1, internal, 6623, 6768
-recovered pasa_asmbl_11736.p1, internal, 7642, 7662
Valid prediction for Augustus_model.g22793.t1
Valid prediction for snap_scaffold_14-snap.128-T1
Valid prediction for Augustus_model.g22794.t1
Valid prediction for snap_scaffold_14-snap.127-T1
Valid prediction for GeneMark_model.58158_t
Valid prediction for GlimmerHMM_glimmerT_33940-T1
Valid prediction for GlimmerHMM_glimmerT_33929-T1
Valid prediction for Augustus_model.g22799.t1
Valid prediction for GlimmerHMM_glimmerT_33941-T1
Valid prediction for snap_scaffold_14-snap.125-T1
Valid prediction for GlimmerHMM_glimmerT_33931-T1
Valid prediction for snap_scaffold_14-snap.117-T1
Valid prediction for GeneMark_model.58168_t
Valid prediction for GeneMark_model.58159_t
Valid prediction for GlimmerHMM_glimmerT_33932-T1
Valid prediction for GeneMark_model.58157_t
Valid prediction for GeneMark_model.58145_t
Valid prediction for GlimmerHMM_glimmerT_33937-T1
Valid prediction for GeneMark_model.58164_t
Valid prediction for GlimmerHMM_glimmerT_33922-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g22800.t1
Valid prediction for HiQ_model.g22801.t1
Valid prediction for GlimmerHMM_glimmerT_33935-T1
Valid prediction for GlimmerHMM_glimmerT_33939-T1
Valid prediction for GeneMark_model.58155_t
Valid prediction for snap_scaffold_14-snap.124-T1
Valid prediction for GlimmerHMM_glimmerT_33930-T1
Valid prediction for GlimmerHMM_glimmerT_33924-T1
Valid prediction for GeneMark_model.58166_t
Valid prediction for snap_scaffold_14-snap.118-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_14-snap.119-T1
Valid prediction for GeneMark_model.58162_t
Valid prediction for Augustus_model.g22796.t1
Valid prediction for GeneMark_model.58163_t
Valid prediction for GlimmerHMM_glimmerT_33923-T1
Couldn't classify 282014, 282349
Sorry, prediction pasa_asmbl_11739.p1 fails validation.
(CGG)	 GC	282014-282349	AA	AAA
Valid prediction for GlimmerHMM_glimmerT_33933-T1
Valid prediction for snap_scaffold_14-snap.121-T1
Valid prediction for GlimmerHMM_glimmerT_33942-T1
Valid prediction for GeneMark_model.58167_t
Valid prediction for GeneMark_model.58148_t
Valid prediction for GlimmerHMM_glimmerT_33926-T1
Valid prediction for GlimmerHMM_glimmerT_33943-T1
Valid prediction for snap_scaffold_14-snap.120-T1
Valid prediction for snap_scaffold_14-snap.114-T1
Valid prediction for Augustus_model.g22802.t1
Valid prediction for GlimmerHMM_glimmerT_33928-T1
Valid prediction for GeneMark_model.58169_t
Valid prediction for GlimmerHMM_glimmerT_33944-T1
Valid prediction for snap_scaffold_14-snap.122-T1
Valid prediction for CodingQuarry_transcript_15486-T1
Valid prediction for Augustus_model.g22795.t1
Valid prediction for snap_scaffold_14-snap.123-T1
Valid prediction for snap_scaffold_14-snap.116-T1
Valid prediction for snap_scaffold_14-snap.113-T1
Valid prediction for snap_scaffold_14-snap.115-T1
Valid prediction for Augustus_model.g22804.t1
Valid prediction for Augustus_model.g22797.t1
Valid prediction for CodingQuarry_transcript_15487-T1
Valid prediction for GlimmerHMM_glimmerT_33927-T1
Valid prediction for GeneMark_model.58165_t
Valid prediction for Augustus_model.g22803.t1
Valid prediction for GeneMark_model.58153_t
Valid prediction for GlimmerHMM_glimmerT_33925-T1
Valid prediction for snap_scaffold_14-snap.126-T1
Valid prediction for GlimmerHMM_glimmerT_33936-T1
Valid prediction for Augustus_model.g22798.t1
Valid prediction for snap_scaffold_14-snap.129-T1
Valid prediction for GeneMark_model.58149_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 292057
-exon list size: 292


building trellis

0.3    
0.7    
1.0    
1.4    
1.7    
2.0    
2.4    
2.7    
3.1    
3.4    
3.7    
4.1    
4.4    
4.8    
5.1    
5.4    
5.8    
6.1    
6.5    
6.8    
7.1    
7.5    
7.8    
8.2    
8.5    
8.8    
9.2    
9.5    
9.9    
10.2    
10.5    
10.9    
11.2    
11.6    
11.9    
12.2    
12.6    
12.9    
13.3    
13.6    
13.9    
14.3    
14.6    
15.0    
15.3    
15.6    
16.0    
16.3    
16.7    
17.0    
17.3    
17.7    
18.0    
18.4    
18.7    
19.0    
19.4    
19.7    
20.1    
20.4    
20.7    
21.1    
21.4    
21.8    
22.1    
22.4    
22.8    
23.1    
23.5    
23.8    
24.1    
24.5    
24.8    
25.2    
25.5    
25.9    
26.2    
26.5    
26.9    
27.2    
27.6    
27.9    
28.2    
28.6    
28.9    
29.3    
29.6    
29.9    
30.3    
30.6    
31.0    
31.3    
31.6    
32.0    
32.3    
32.7    
33.0    
33.3    
33.7    
34.0    
34.4    
34.7    
35.0    
35.4    
35.7    
36.1    
36.4    
36.7    
37.1    
37.4    
37.8    
38.1    
38.4    
38.8    
39.1    
39.5    
39.8    
40.1    
40.5    
40.8    
41.2    
41.5    
41.8    
42.2    
42.5    
42.9    
43.2    
43.5    
43.9    
44.2    
44.6    
44.9    
45.2    
45.6    
45.9    
46.3    
46.6    
46.9    
47.3    
47.6    
48.0    
48.3    
48.6    
49.0    
49.3    
49.7    
50.0    
50.3    
50.7    
51.0    
51.4    
51.7    
52.0    
52.4    
52.7    
53.1    
53.4    
53.7    
54.1    
54.4    
54.8    
55.1    
55.4    
55.8    
56.1    
56.5    
56.8    
57.1    
57.5    
57.8    
58.2    
58.5    
58.8    
59.2    
59.5    
59.9    
60.2    
60.5    
60.9    
61.2    
61.6    
61.9    
62.2    
62.6    
62.9    
63.3    
63.6    
63.9    
64.3    
64.6    
65.0    
65.3    
65.6    
66.0    
66.3    
66.7    
67.0    
67.3    
67.7    
68.0    
68.4    
68.7    
69.0    
69.4    
69.7    
70.1    
70.4    
70.7    
71.1    
71.4    
71.8    
72.1    
72.4    
72.8    
73.1    
73.5    
73.8    
74.1    
74.5    
74.8    
75.2    
75.5    
75.9    
76.2    
76.5    
76.9    
77.2    
77.6    
77.9    
78.2    
78.6    
78.9    
79.3    
79.6    
79.9    
80.3    
80.6    
81.0    
81.3    
81.6    
82.0    
82.3    
82.7    
83.0    
83.3    
83.7    
84.0    
84.4    
84.7    
85.0    
85.4    
85.7    
86.1    
86.4    
86.7    
87.1    
87.4    
87.8    
88.1    
88.4    
88.8    
89.1    
89.5    
89.8    
90.1    
90.5    
90.8    
91.2    
91.5    
91.8    
92.2    
92.5    
92.9    
93.2    
93.5    
93.9    
94.2    
94.6    
94.9    
95.2    
95.6    
95.9    
96.3    
96.6    
96.9    
97.3    
97.6    
98.0    
98.3    
98.6    
99.0    
99.3    
99.7    
-found 21 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 18 predictions persist after filtering for low support