-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_14/scaffold_14_4292999-4436843

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_14-snap.814-T1
Valid prediction for GeneMark_model.58948_t
Valid prediction for snap_scaffold_14-snap.833-T1
Valid prediction for snap_scaffold_14-snap.835-T1
Valid prediction for GeneMark_model.58971_t
Valid prediction for GlimmerHMM_glimmerT_34422-T1
Valid prediction for GeneMark_model.58961_t
Valid prediction for GlimmerHMM_glimmerT_34427-T1
Valid prediction for GlimmerHMM_glimmerT_34416-T1
Valid prediction for snap_scaffold_14-snap.827-T1
Valid prediction for GeneMark_model.58974_t
Valid prediction for GeneMark_model.58941_t
Valid prediction for snap_scaffold_14-snap.810-T1
Valid prediction for GeneMark_model.58942_t
Valid prediction for GeneMark_model.58970_t
Valid prediction for GeneMark_model.58927_t
Valid prediction for GlimmerHMM_glimmerT_34417-T1
Valid prediction for GeneMark_model.58929_t
Valid prediction for GeneMark_model.58968_t
Valid prediction for GlimmerHMM_glimmerT_34436-T1
Valid prediction for snap_scaffold_14-snap.819-T1
Valid prediction for GeneMark_model.58956_t
Valid prediction for GeneMark_model.58960_t
Valid prediction for GeneMark_model.58954_t
Valid prediction for snap_scaffold_14-snap.820-T1
Valid prediction for GlimmerHMM_glimmerT_34431-T1
Valid prediction for snap_scaffold_14-snap.844-T1
Valid prediction for GlimmerHMM_glimmerT_34437-T1
Valid prediction for snap_scaffold_14-snap.828-T1
Valid prediction for Augustus_model.g23158.t1
Valid prediction for GeneMark_model.58959_t
Valid prediction for GeneMark_model.58962_t
Valid prediction for GeneMark_model.58923_t
Valid prediction for GeneMark_model.58972_t
Valid prediction for GlimmerHMM_glimmerT_34419-T1
Valid prediction for GlimmerHMM_glimmerT_34438-T1
Valid prediction for GlimmerHMM_glimmerT_34426-T1
Valid prediction for GeneMark_model.58946_t
Valid prediction for GeneMark_model.58947_t
Valid prediction for GeneMark_model.58932_t
Valid prediction for snap_scaffold_14-snap.838-T1
Valid prediction for GeneMark_model.58925_t
Valid prediction for snap_scaffold_14-snap.812-T1
Valid prediction for Augustus_model.g23156.t1
Valid prediction for GeneMark_model.58938_t
Valid prediction for snap_scaffold_14-snap.825-T1
Valid prediction for GlimmerHMM_glimmerT_34429-T1
Valid prediction for GeneMark_model.58936_t
Valid prediction for snap_scaffold_14-snap.836-T1
Valid prediction for GeneMark_model.58977_t
Valid prediction for GeneMark_model.58966_t
Valid prediction for GeneMark_model.58943_t
Valid prediction for snap_scaffold_14-snap.842-T1
Valid prediction for GeneMark_model.58964_t
Valid prediction for GeneMark_model.58935_t
Valid prediction for snap_scaffold_14-snap.840-T1
Valid prediction for GeneMark_model.58921_t
Valid prediction for snap_scaffold_14-snap.823-T1
Valid prediction for GeneMark_model.58952_t
Valid prediction for snap_scaffold_14-snap.831-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_34423-T1
Valid prediction for snap_scaffold_14-snap.843-T1
Valid prediction for GeneMark_model.58949_t
Valid prediction for GlimmerHMM_glimmerT_34435-T1
Valid prediction for snap_scaffold_14-snap.811-T1
Valid prediction for pasa_asmbl_13027.p1
Valid prediction for snap_scaffold_14-snap.839-T1
Valid prediction for GeneMark_model.58958_t
Valid prediction for GeneMark_model.58973_t
Valid prediction for GlimmerHMM_glimmerT_34418-T1
Valid prediction for GlimmerHMM_glimmerT_34430-T1
Valid prediction for snap_scaffold_14-snap.821-T1
Valid prediction for Augustus_model.g23162.t1
Valid prediction for snap_scaffold_14-snap.816-T1
Valid prediction for GeneMark_model.58940_t
Valid prediction for snap_scaffold_14-snap.824-T1
Valid prediction for snap_scaffold_14-snap.813-T1
Valid prediction for GeneMark_model.58939_t
Valid prediction for GeneMark_model.58945_t
Valid prediction for GeneMark_model.58922_t
Valid prediction for snap_scaffold_14-snap.834-T1
Valid prediction for CodingQuarry_transcript_15587-T1
Valid prediction for GeneMark_model.58951_t
Valid prediction for GlimmerHMM_glimmerT_34414-T1
Valid prediction for GeneMark_model.58937_t
Valid prediction for GeneMark_model.58944_t
Valid prediction for GeneMark_model.58931_t
Valid prediction for GeneMark_model.58926_t
Valid prediction for GeneMark_model.58957_t
Valid prediction for GeneMark_model.58920_t
Valid prediction for GlimmerHMM_glimmerT_34424-T1
Valid prediction for GlimmerHMM_glimmerT_34433-T1
Valid prediction for GlimmerHMM_glimmerT_34415-T1
Valid prediction for GlimmerHMM_glimmerT_34432-T1
Valid prediction for snap_scaffold_14-snap.832-T1
Valid prediction for HiQ_model.g23157.t1
Valid prediction for snap_scaffold_14-snap.841-T1
Valid prediction for snap_scaffold_14-snap.818-T1
Valid prediction for snap_scaffold_14-snap.837-T1
Valid prediction for GeneMark_model.58965_t
Valid prediction for GeneMark_model.58928_t
Valid prediction for Augustus_model.g23160.t1
Valid prediction for GeneMark_model.58953_t
Valid prediction for GeneMark_model.58934_t
Valid prediction for GlimmerHMM_glimmerT_34425-T1
Valid prediction for GeneMark_model.58969_t
Valid prediction for GeneMark_model.58933_t
Valid prediction for pasa_asmbl_13029.p1
Valid prediction for Augustus_model.g23155.t1
Valid prediction for GeneMark_model.58975_t
Valid prediction for GlimmerHMM_glimmerT_34428-T1
Valid prediction for snap_scaffold_14-snap.817-T1
Valid prediction for GeneMark_model.58967_t
Valid prediction for GeneMark_model.58976_t
Valid prediction for snap_scaffold_14-snap.829-T1
Valid prediction for snap_scaffold_14-snap.826-T1
Valid prediction for snap_scaffold_14-snap.815-T1
Valid prediction for GlimmerHMM_glimmerT_34420-T1
Valid prediction for snap_scaffold_14-snap.830-T1
Valid prediction for GeneMark_model.58963_t
Valid prediction for GeneMark_model.58930_t
Valid prediction for GeneMark_model.58955_t
Valid prediction for Augustus_model.g23159.t1
Valid prediction for Augustus_model.g23161.t1
Valid prediction for GlimmerHMM_glimmerT_34434-T1
Valid prediction for GeneMark_model.58924_t
Valid prediction for GlimmerHMM_glimmerT_34421-T1
Valid prediction for snap_scaffold_14-snap.822-T1
Valid prediction for Augustus_model.g23154.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8723, rend_intergenic: 5426  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13528, rend_intergenic: 9873  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22416, rend_intergenic: 17913  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37656, rend_intergenic: 24138  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48092, rend_intergenic: 44401  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60850, rend_intergenic: 51205  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64509, rend_intergenic: 63982  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67809, rend_intergenic: 64658  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72048, rend_intergenic: 70850  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76452, rend_intergenic: 72097  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81401, rend_intergenic: 77181  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89617, rend_intergenic: 81909  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94664, rend_intergenic: 91745  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101829, rend_intergenic: 95645  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107242, rend_intergenic: 106059  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114286, rend_intergenic: 107881  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124808, rend_intergenic: 120586  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134176, rend_intergenic: 130431  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135003, rend_intergenic: 134197  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136755, rend_intergenic: 135572  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140673, rend_intergenic: 136765  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 143845
-exon list size: 703


building trellis

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-found 37 predictions from path traversal
Error with prediction: snap lend_intergenic: 8723, rend_intergenic: 5426  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13528, rend_intergenic: 9873  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22416, rend_intergenic: 17913  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37656, rend_intergenic: 24138  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48092, rend_intergenic: 44401  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60850, rend_intergenic: 51205  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64509, rend_intergenic: 63982  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67809, rend_intergenic: 64658  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72048, rend_intergenic: 70850  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76452, rend_intergenic: 72097  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81401, rend_intergenic: 77181  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89617, rend_intergenic: 81909  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94664, rend_intergenic: 91745  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101829, rend_intergenic: 95645  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107242, rend_intergenic: 106059  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114286, rend_intergenic: 107881  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124808, rend_intergenic: 120586  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134176, rend_intergenic: 130431  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135003, rend_intergenic: 134197  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136755, rend_intergenic: 135572  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140673, rend_intergenic: 136765  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 7 predictions persist after filtering for low support