-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_14/scaffold_14_3990787-4121840

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for HiQ_model.g23129.t1
Valid prediction for GeneMark_model.58866_t
Valid prediction for GeneMark_model.58831_t
Valid prediction for snap_scaffold_14-snap.735-T1
Valid prediction for snap_scaffold_14-snap.763-T1
Valid prediction for GeneMark_model.58857_t
Valid prediction for GeneMark_model.58855_t
Valid prediction for GeneMark_model.58852_t
Valid prediction for snap_scaffold_14-snap.739-T1
Valid prediction for GlimmerHMM_glimmerT_34374-T1
Valid prediction for GeneMark_model.58845_t
Valid prediction for GlimmerHMM_glimmerT_34378-T1
Valid prediction for Augustus_model.g23126.t1
Valid prediction for CodingQuarry_transcript_15585-T1
Valid prediction for GlimmerHMM_glimmerT_34364-T1
Valid prediction for CodingQuarry_transcript_15582-T1
Valid prediction for snap_scaffold_14-snap.745-T1
Valid prediction for GeneMark_model.58850_t
Valid prediction for snap_scaffold_14-snap.754-T1
Valid prediction for snap_scaffold_14-snap.740-T1
Valid prediction for snap_scaffold_14-snap.750-T1
Valid prediction for GlimmerHMM_glimmerT_34365-T1
Valid prediction for snap_scaffold_14-snap.756-T1
Valid prediction for pasa_asmbl_11949.p1
Valid prediction for snap_scaffold_14-snap.765-T1
Valid prediction for snap_scaffold_14-snap.734-T1
Valid prediction for GeneMark_model.58864_t
Valid prediction for snap_scaffold_14-snap.748-T1
Valid prediction for GlimmerHMM_glimmerT_34381-T1
Valid prediction for GlimmerHMM_glimmerT_34376-T1
Valid prediction for Augustus_model.g23127.t1
Valid prediction for GeneMark_model.58837_t
Valid prediction for snap_scaffold_14-snap.758-T1
Valid prediction for Augustus_model.g23131.t1
Valid prediction for snap_scaffold_14-snap.744-T1
Valid prediction for Augustus_model.g23128.t1
Valid prediction for snap_scaffold_14-snap.764-T1
Valid prediction for GeneMark_model.58834_t
Valid prediction for GeneMark_model.58844_t
Valid prediction for snap_scaffold_14-snap.737-T1
Valid prediction for snap_scaffold_14-snap.767-T1
Valid prediction for Augustus_model.g23125.t1
Valid prediction for GlimmerHMM_glimmerT_34382-T1
Valid prediction for GeneMark_model.58860_t
Valid prediction for Augustus_model.g23121.t1
Valid prediction for GeneMark_model.58847_t
Valid prediction for snap_scaffold_14-snap.759-T1
Valid prediction for Augustus_model.g23116.t1
Valid prediction for GeneMark_model.58841_t
Valid prediction for GeneMark_model.58835_t
Valid prediction for GlimmerHMM_glimmerT_34369-T1
Valid prediction for GeneMark_model.58839_t
Valid prediction for GlimmerHMM_glimmerT_34366-T1
Valid prediction for Augustus_model.g23118.t1
Valid prediction for GlimmerHMM_glimmerT_34384-T1
Valid prediction for snap_scaffold_14-snap.747-T1
Valid prediction for GeneMark_model.58833_t
Valid prediction for snap_scaffold_14-snap.733-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_14-snap.752-T1
Valid prediction for GlimmerHMM_glimmerT_34383-T1
Valid prediction for GeneMark_model.58849_t
Valid prediction for GlimmerHMM_glimmerT_34368-T1
Valid prediction for GlimmerHMM_glimmerT_34380-T1
Valid prediction for snap_scaffold_14-snap.742-T1
Valid prediction for Augustus_model.g23119.t1
Valid prediction for GeneMark_model.58863_t
Valid prediction for GeneMark_model.58859_t
Valid prediction for GeneMark_model.58854_t
Valid prediction for snap_scaffold_14-snap.741-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for Augustus_model.g23117.t1
Valid prediction for GeneMark_model.58832_t
Valid prediction for GlimmerHMM_glimmerT_34375-T1
Valid prediction for GeneMark_model.58867_t
Valid prediction for GeneMark_model.58853_t
Valid prediction for snap_scaffold_14-snap.749-T1
Valid prediction for Augustus_model.g23122.t1
Valid prediction for GlimmerHMM_glimmerT_34373-T1
Valid prediction for GeneMark_model.58830_t
Valid prediction for GeneMark_model.58840_t
Valid prediction for GeneMark_model.58838_t
Valid prediction for GeneMark_model.58848_t
Valid prediction for GeneMark_model.58836_t
Valid prediction for GlimmerHMM_glimmerT_34367-T1
Valid prediction for GlimmerHMM_glimmerT_34377-T1
Valid prediction for snap_scaffold_14-snap.746-T1
Valid prediction for GeneMark_model.58865_t
Valid prediction for Augustus_model.g23123.t1
Valid prediction for HiQ_model.g23130.t1
Valid prediction for snap_scaffold_14-snap.762-T1
Valid prediction for GeneMark_model.58851_t
Valid prediction for GlimmerHMM_glimmerT_34363-T1
Valid prediction for snap_scaffold_14-snap.751-T1
Valid prediction for snap_scaffold_14-snap.766-T1
Valid prediction for GeneMark_model.58858_t
Valid prediction for pasa_asmbl_13015.p1
Valid prediction for snap_scaffold_14-snap.755-T1
Valid prediction for GeneMark_model.58843_t
Valid prediction for Augustus_model.g23124.t1
Valid prediction for snap_scaffold_14-snap.738-T1
Valid prediction for GlimmerHMM_glimmerT_34371-T1
Valid prediction for GlimmerHMM_glimmerT_34370-T1
Valid prediction for GeneMark_model.58842_t
Valid prediction for Augustus_model.g23115.t1
Valid prediction for snap_scaffold_14-snap.743-T1
Valid prediction for CodingQuarry_transcript_15583-T1
Valid prediction for Augustus_model.g23120.t1
Valid prediction for snap_scaffold_14-snap.753-T1
Valid prediction for GeneMark_model.58827_t
Valid prediction for GlimmerHMM_glimmerT_34379-T1
Valid prediction for CodingQuarry_transcript_15584-T1
Valid prediction for snap_scaffold_14-snap.761-T1
Valid prediction for GlimmerHMM_glimmerT_34372-T1
Valid prediction for GeneMark_model.58846_t
Valid prediction for GeneMark_model.58829_t
Valid prediction for snap_scaffold_14-snap.736-T1
Valid prediction for snap_scaffold_14-snap.757-T1
Valid prediction for GeneMark_model.58856_t
Valid prediction for snap_scaffold_14-snap.760-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 19946, rend_intergenic: 18139  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25932, rend_intergenic: 20431  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38825, rend_intergenic: 37662  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45701, rend_intergenic: 41188  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59955, rend_intergenic: 57952  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63307, rend_intergenic: 61321  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87303, rend_intergenic: 81665  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95796, rend_intergenic: 87486  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98916, rend_intergenic: 96032  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 131054
-exon list size: 544


building trellis

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91.6    
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92.3    
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92.9    
93.0    
93.2    
93.4    
93.6    
93.8    
94.0    
94.1    
94.3    
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94.9    
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95.6    
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97.6    
97.8    
98.0    
98.2    
98.4    
98.5    
98.7    
98.9    
99.1    
99.3    
99.5    
99.6    
99.8    
-found 34 predictions from path traversal
Error with prediction: snap lend_intergenic: 19946, rend_intergenic: 18139  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25932, rend_intergenic: 20431  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38825, rend_intergenic: 37662  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45701, rend_intergenic: 41188  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59955, rend_intergenic: 57952  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63307, rend_intergenic: 61321  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87303, rend_intergenic: 81665  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95796, rend_intergenic: 87486  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98916, rend_intergenic: 96032  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 18 predictions persist after filtering for low support