-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_14/scaffold_14_3838763-3994220

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_14-snap.692-T1
Valid prediction for GeneMark_model.58775_t
Valid prediction for GeneMark_model.58820_t
Valid prediction for snap_scaffold_14-snap.730-T1
Valid prediction for snap_scaffold_14-snap.699-T1
Valid prediction for GlimmerHMM_glimmerT_34356-T1
Valid prediction for GeneMark_model.58789_t
Valid prediction for snap_scaffold_14-snap.690-T1
Valid prediction for GlimmerHMM_glimmerT_34348-T1
Valid prediction for GeneMark_model.58791_t
Valid prediction for GlimmerHMM_glimmerT_34359-T1
Valid prediction for GeneMark_model.58826_t
Valid prediction for snap_scaffold_14-snap.708-T1
Valid prediction for snap_scaffold_14-snap.698-T1
Valid prediction for snap_scaffold_14-snap.712-T1
Valid prediction for GlimmerHMM_glimmerT_34355-T1
Valid prediction for GeneMark_model.58811_t
Valid prediction for GeneMark_model.58783_t
Valid prediction for snap_scaffold_14-snap.727-T1
Valid prediction for Augustus_model.g23104.t1
Valid prediction for GeneMark_model.58774_t
Valid prediction for GlimmerHMM_glimmerT_34360-T1
Valid prediction for GlimmerHMM_glimmerT_34352-T1
Valid prediction for GlimmerHMM_glimmerT_34349-T1
Valid prediction for snap_scaffold_14-snap.697-T1
Valid prediction for GeneMark_model.58803_t
Valid prediction for Augustus_model.g23113.t1
Valid prediction for GeneMark_model.58807_t
Valid prediction for snap_scaffold_14-snap.696-T1
Valid prediction for GeneMark_model.58816_t
Valid prediction for GlimmerHMM_glimmerT_34361-T1
Valid prediction for GeneMark_model.58787_t
Valid prediction for Augustus_model.g23110.t1
Valid prediction for Augustus_model.g23109.t1
Valid prediction for snap_scaffold_14-snap.686-T1
Valid prediction for Augustus_model.g23103.t1
Valid prediction for snap_scaffold_14-snap.717-T1
Valid prediction for GlimmerHMM_glimmerT_34358-T1
Valid prediction for GlimmerHMM_glimmerT_34350-T1
Valid prediction for GeneMark_model.58809_t
Valid prediction for snap_scaffold_14-snap.720-T1
Valid prediction for GeneMark_model.58801_t
Valid prediction for GeneMark_model.58776_t
Valid prediction for snap_scaffold_14-snap.704-T1
Valid prediction for snap_scaffold_14-snap.725-T1
Valid prediction for GeneMark_model.58793_t
Valid prediction for snap_scaffold_14-snap.706-T1
Valid prediction for GeneMark_model.58772_t
Valid prediction for GeneMark_model.58796_t
Valid prediction for GlimmerHMM_glimmerT_34345-T1
Valid prediction for GeneMark_model.58781_t
Valid prediction for snap_scaffold_14-snap.732-T1
Valid prediction for GeneMark_model.58818_t
Valid prediction for GlimmerHMM_glimmerT_34351-T1
Valid prediction for snap_scaffold_14-snap.694-T1
Valid prediction for snap_scaffold_14-snap.729-T1
Valid prediction for GeneMark_model.58805_t
Valid prediction for GlimmerHMM_glimmerT_34346-T1
Valid prediction for GeneMark_model.58798_t
Valid prediction for snap_scaffold_14-snap.710-T1
Valid prediction for GeneMark_model.58813_t
Valid prediction for GlimmerHMM_glimmerT_34357-T1
Valid prediction for Augustus_model.g23112.t1
Valid prediction for GeneMark_model.58822_t
Valid prediction for GeneMark_model.58824_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_34354-T1
Valid prediction for Augustus_model.g23111.t1
Valid prediction for GeneMark_model.58795_t
Valid prediction for GlimmerHMM_glimmerT_34353-T1
Valid prediction for GeneMark_model.58799_t
Valid prediction for GeneMark_model.58778_t
Valid prediction for snap_scaffold_14-snap.718-T1
Valid prediction for snap_scaffold_14-snap.714-T1
Valid prediction for snap_scaffold_14-snap.705-T1
Valid prediction for GeneMark_model.58814_t
Valid prediction for GeneMark_model.58800_t
Valid prediction for GeneMark_model.58790_t
Valid prediction for snap_scaffold_14-snap.719-T1
Valid prediction for GeneMark_model.58782_t
Valid prediction for snap_scaffold_14-snap.693-T1
Valid prediction for Augustus_model.g23102.t1
Valid prediction for snap_scaffold_14-snap.715-T1
Valid prediction for GeneMark_model.58815_t
Valid prediction for GeneMark_model.58773_t
Valid prediction for snap_scaffold_14-snap.731-T1
Valid prediction for snap_scaffold_14-snap.701-T1
Valid prediction for snap_scaffold_14-snap.688-T1
Valid prediction for snap_scaffold_14-snap.689-T1
Valid prediction for GeneMark_model.58823_t
Valid prediction for Augustus_model.g23107.t1
Valid prediction for GeneMark_model.58771_t
Valid prediction for snap_scaffold_14-snap.726-T1
Valid prediction for GeneMark_model.58802_t
Valid prediction for GlimmerHMM_glimmerT_34347-T1
Valid prediction for snap_scaffold_14-snap.724-T1
Valid prediction for GeneMark_model.58777_t
Valid prediction for GeneMark_model.58788_t
Valid prediction for GeneMark_model.58785_t
Valid prediction for snap_scaffold_14-snap.702-T1
Valid prediction for GeneMark_model.58786_t
Valid prediction for GeneMark_model.58806_t
Valid prediction for GeneMark_model.58784_t
Valid prediction for Augustus_model.g23108.t1
Valid prediction for snap_scaffold_14-snap.722-T1
Valid prediction for GeneMark_model.58804_t
Valid prediction for GeneMark_model.58779_t
Valid prediction for snap_scaffold_14-snap.728-T1
Valid prediction for GeneMark_model.58780_t
Valid prediction for snap_scaffold_14-snap.713-T1
Valid prediction for snap_scaffold_14-snap.691-T1
Valid prediction for Augustus_model.g23105.t1
Valid prediction for snap_scaffold_14-snap.723-T1
Valid prediction for snap_scaffold_14-snap.709-T1
Valid prediction for GeneMark_model.58817_t
Valid prediction for GeneMark_model.58810_t
Valid prediction for GeneMark_model.58794_t
Valid prediction for GeneMark_model.58825_t
Valid prediction for GeneMark_model.58812_t
Valid prediction for snap_scaffold_14-snap.695-T1
Valid prediction for snap_scaffold_14-snap.707-T1
Valid prediction for snap_scaffold_14-snap.684-T1
Valid prediction for GeneMark_model.58792_t
Valid prediction for snap_scaffold_14-snap.700-T1
Valid prediction for GlimmerHMM_glimmerT_34344-T1
Valid prediction for snap_scaffold_14-snap.711-T1
Valid prediction for GeneMark_model.58808_t
Valid prediction for GeneMark_model.58821_t
Valid prediction for Augustus_model.g23106.t1
Valid prediction for GeneMark_model.58797_t
Valid prediction for snap_scaffold_14-snap.685-T1
Valid prediction for snap_scaffold_14-snap.703-T1
Valid prediction for snap_scaffold_14-snap.716-T1
Valid prediction for snap_scaffold_14-snap.687-T1
Valid prediction for GeneMark_model.58819_t
Valid prediction for snap_scaffold_14-snap.721-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 10841, rend_intergenic: 9909  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18998, rend_intergenic: 16565  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19342, rend_intergenic: 19199  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25754, rend_intergenic: 22101  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30675, rend_intergenic: 28642  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62545, rend_intergenic: 60107  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70904, rend_intergenic: 64802  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74908, rend_intergenic: 72665  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76292, rend_intergenic: 75232  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101049, rend_intergenic: 79591  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105309, rend_intergenic: 102816  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109328, rend_intergenic: 106134  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126746, rend_intergenic: 109699  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130553, rend_intergenic: 127779  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136051, rend_intergenic: 130724  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139792, rend_intergenic: 137629  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144428, rend_intergenic: 139819  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152024, rend_intergenic: 151421  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 155458
-exon list size: 758


building trellis

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-found 33 predictions from path traversal
Error with prediction: snap lend_intergenic: 10841, rend_intergenic: 9909  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18998, rend_intergenic: 16565  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19342, rend_intergenic: 19199  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25754, rend_intergenic: 22101  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30675, rend_intergenic: 28642  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62545, rend_intergenic: 60107  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70904, rend_intergenic: 64802  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74908, rend_intergenic: 72665  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76292, rend_intergenic: 75232  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101049, rend_intergenic: 79591  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105309, rend_intergenic: 102816  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109328, rend_intergenic: 106134  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126746, rend_intergenic: 109699  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130553, rend_intergenic: 127779  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136051, rend_intergenic: 130724  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139792, rend_intergenic: 137629  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144428, rend_intergenic: 139819  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152024, rend_intergenic: 151421  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 17 predictions persist after filtering for low support