-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_14/scaffold_14_15721953-15920581

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.61953_t
Valid prediction for GeneMark_model.61945_t
Valid prediction for snap_scaffold_14-snap.3309-T1
Valid prediction for GeneMark_model.61976_t
Valid prediction for snap_scaffold_14-snap.3307-T1
Valid prediction for GlimmerHMM_glimmerT_36107-T1
Valid prediction for snap_scaffold_14-snap.3321-T1
Valid prediction for GlimmerHMM_glimmerT_36099-T1
Valid prediction for snap_scaffold_14-snap.3341-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for GeneMark_model.61970_t
Valid prediction for GeneMark_model.61974_t
Valid prediction for snap_scaffold_14-snap.3301-T1
Valid prediction for GeneMark_model.61927_t
Valid prediction for Augustus_model.g24303.t1
Valid prediction for pasa_asmbl_12626.p1
Valid prediction for GlimmerHMM_glimmerT_36108-T1
Valid prediction for GlimmerHMM_glimmerT_36084-T1
Valid prediction for GeneMark_model.61947_t
Couldn't classify 83652, 83791
Couldn't classify 85110, 85154
Sorry, prediction pasa_asmbl_12621.p1 fails validation.
(TAT)	 GC	83652-83791	GT	AGG
(AAT)	 AG	84150-84338	GT	AGG
(GTG)	 AG	84897-85002	GT	AGG
(TAT)	 AG	85110-85154	GG	AGG
-recovered pasa_asmbl_12621.p1, internal, 84150, 84338
-recovered pasa_asmbl_12621.p1, internal, 84897, 85002
Valid prediction for snap_scaffold_14-snap.3319-T1
Valid prediction for GeneMark_model.61952_t
Valid prediction for GeneMark_model.61933_t
Valid prediction for CodingQuarry_transcript_15917-T1
Valid prediction for snap_scaffold_14-snap.3311-T1
Valid prediction for GlimmerHMM_glimmerT_36106-T1
Valid prediction for GeneMark_model.61968_t
Valid prediction for snap_scaffold_14-snap.3314-T1
Valid prediction for GeneMark_model.61936_t
Valid prediction for GeneMark_model.61931_t
Valid prediction for GlimmerHMM_glimmerT_36085-T1
Valid prediction for snap_scaffold_14-snap.3299-T1
Valid prediction for Augustus_model.g24300.t1
Valid prediction for GlimmerHMM_glimmerT_36096-T1
Valid prediction for HiQ_model.g24311.t1
Valid prediction for snap_scaffold_14-snap.3316-T1
Valid prediction for GeneMark_model.61955_t
Valid prediction for snap_scaffold_14-snap.3330-T1
Valid prediction for GeneMark_model.61934_t
Valid prediction for Augustus_model.g24296.t1
Valid prediction for snap_scaffold_14-snap.3339-T1
Valid prediction for GlimmerHMM_glimmerT_36111-T1
Valid prediction for Augustus_model.g24301.t1
Valid prediction for snap_scaffold_14-snap.3325-T1
Valid prediction for GeneMark_model.61957_t
Valid prediction for snap_scaffold_14-snap.3304-T1
Valid prediction for snap_scaffold_14-snap.3303-T1
Valid prediction for GeneMark_model.61944_t
Valid prediction for Augustus_model.g24297.t1
Valid prediction for GeneMark_model.61950_t
Valid prediction for GeneMark_model.61977_t
Valid prediction for GlimmerHMM_glimmerT_36109-T1
Valid prediction for GeneMark_model.61959_t
Valid prediction for GeneMark_model.61948_t
Valid prediction for snap_scaffold_14-snap.3331-T1
Valid prediction for GlimmerHMM_glimmerT_36094-T1
Valid prediction for GlimmerHMM_glimmerT_36105-T1
Couldn't classify 193689, 193789
Sorry, prediction pasa_asmbl_12627.p1 fails validation.
(AGG)	 CC	193689-193789	GT	AGG
(GCA)	 AG	193878-193953	GT	AGG
(AAA)	 AG	194066-194151	GT	CAG
(GGA)	 AG	195165-195225	GT	AGG
(AAC)	 AG	195445-195511	GT	GAG
(TCA)	 AG	195786-195835	GT	AGG
(AGG)	 AG	196201-196250	GT	TTG
(TCT)	 AG	196669-196716	GT	TGG
(CTC)	 AG	197197-197296	AG	GAA
add_exon() Sorry, pasa_asmbl_12627.p1 195445-195511-terminal-3 is invalid.
-recovered pasa_asmbl_12627.p1, terminal, 195445, 195511
-recovered pasa_asmbl_12627.p1, terminal, 197197, 197296
-recovered pasa_asmbl_12627.p1, internal, 193878, 193953
-recovered pasa_asmbl_12627.p1, internal, 194066, 194151
-recovered pasa_asmbl_12627.p1, internal, 195165, 195225
-recovered pasa_asmbl_12627.p1, internal, 195445, 195511
-recovered pasa_asmbl_12627.p1, internal, 195786, 195835
-recovered pasa_asmbl_12627.p1, internal, 196201, 196250
-recovered pasa_asmbl_12627.p1, internal, 196669, 196716
Valid prediction for CodingQuarry_transcript_15919-T1
Valid prediction for GeneMark_model.61942_t
Valid prediction for CodingQuarry_transcript_15916-T1
Valid prediction for pasa_asmbl_12624.p1
Valid prediction for snap_scaffold_14-snap.3326-T1
Valid prediction for Augustus_model.g24310.t1
Valid prediction for GeneMark_model.61929_t
Couldn't classify 170667, 170722
Couldn't classify 174288, 174483
Sorry, prediction pasa_asmbl_12703.p1 fails validation.
(CTG)	 GT	170667-170722	GT	CAG
(GTC)	 AG	171577-172026	GT	GGG
(ACT)	 AG	172270-172384	GT	AGG
(GTG)	 AG	172923-173019	GT	AGG
(GGA)	 AG	173353-173524	GT	AGG
(TAA)	 AG	174288-174483	GT	GTG
-recovered pasa_asmbl_12703.p1, terminal, 172923, 173019
-recovered pasa_asmbl_12703.p1, internal, 171577, 172026
-recovered pasa_asmbl_12703.p1, internal, 172270, 172384
-recovered pasa_asmbl_12703.p1, internal, 172923, 173019
-recovered pasa_asmbl_12703.p1, internal, 173353, 173524
-recovered pasa_asmbl_12703.p1, internal, 174288, 174483
Valid prediction for GeneMark_model.61979_t
Valid prediction for GeneMark_model.61965_t
Valid prediction for GlimmerHMM_glimmerT_36086-T1
Valid prediction for Augustus_model.g24313.t1
Valid prediction for GeneMark_model.61961_t
Valid prediction for GlimmerHMM_glimmerT_36090-T1
Valid prediction for Augustus_model.g24302.t1
Valid prediction for GlimmerHMM_glimmerT_36102-T1
Valid prediction for GeneMark_model.61926_t
Couldn't classify 122634, 122732
Sorry, prediction pasa_asmbl_12623.p1 fails validation.
(GGA)	 AG	122634-122732	GT	GGG
(ATT)	 AG	122913-123035	GT	ACG
(ACC)	 AG	123421-123584	GT	AGG
(TGC)	 AG	123849-123984	GT	AGG
(AGC)	 AG	124560-124706	AT	AAA
-recovered pasa_asmbl_12623.p1, terminal, 124560, 124706
-recovered pasa_asmbl_12623.p1, internal, 122634, 122732
-recovered pasa_asmbl_12623.p1, internal, 122913, 123035
-recovered pasa_asmbl_12623.p1, internal, 123421, 123584
-recovered pasa_asmbl_12623.p1, internal, 123849, 123984
Valid prediction for snap_scaffold_14-snap.3324-T1
Valid prediction for HiQ_model.g24308.t1
Valid prediction for snap_scaffold_14-snap.3334-T1
Valid prediction for GeneMark_model.61923_t
Valid prediction for GeneMark_model.61980_t
Valid prediction for GlimmerHMM_glimmerT_36092-T1
Valid prediction for snap_scaffold_14-snap.3336-T1
Valid prediction for snap_scaffold_14-snap.3332-T1
Valid prediction for GeneMark_model.61938_t
Valid prediction for Augustus_model.g24306.t1
Valid prediction for GeneMark_model.61963_t
Valid prediction for GeneMark_model.61939_t
Valid prediction for GlimmerHMM_glimmerT_36100-T1
Valid prediction for GlimmerHMM_glimmerT_36091-T1
Valid prediction for snap_scaffold_14-snap.3327-T1
Valid prediction for snap_scaffold_14-snap.3308-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.61937_t
Valid prediction for GlimmerHMM_glimmerT_36083-T1
Valid prediction for GeneMark_model.61922_t
Valid prediction for GlimmerHMM_glimmerT_36095-T1
Valid prediction for GeneMark_model.61956_t
Valid prediction for GeneMark_model.61946_t
Valid prediction for GeneMark_model.61928_t
Valid prediction for snap_scaffold_14-snap.3328-T1
Valid prediction for GeneMark_model.61930_t
Valid prediction for Augustus_model.g24304.t1
Valid prediction for GeneMark_model.61964_t
Valid prediction for snap_scaffold_14-snap.3323-T1
Valid prediction for CodingQuarry_transcript_15910-T1
Valid prediction for GlimmerHMM_glimmerT_36103-T1
Valid prediction for GlimmerHMM_glimmerT_36087-T1
Valid prediction for snap_scaffold_14-snap.3313-T1
Valid prediction for CodingQuarry_transcript_15911-T1
Couldn't classify 165412, 165435
Couldn't classify 166134, 166565
Sorry, prediction pasa_asmbl_13730.p1 fails validation.
(CAT)	 AG	165412-165435	GT	AGG
(ATC)	 AG	165682-165912	GT	GGG
(GGG)	 AG	166134-166565	GC	TGG
-recovered pasa_asmbl_13730.p1, internal, 165412, 165435
-recovered pasa_asmbl_13730.p1, internal, 165682, 165912
-recovered pasa_asmbl_13730.p1, internal, 166134, 166565
Valid prediction for GeneMark_model.61921_t
Valid prediction for GlimmerHMM_glimmerT_36101-T1
Valid prediction for GlimmerHMM_glimmerT_36110-T1
Valid prediction for Augustus_model.g24307.t1
Valid prediction for GeneMark_model.61969_t
Couldn't classify 159070, 159142
Couldn't classify 160799, 161007
Sorry, prediction pasa_asmbl_13732.p1 fails validation.
(GGC)	 AG	159070-159142	GT	GGG
(GTC)	 AG	159947-160108	GT	AGG
(CCA)	 AG	160799-161007	TT	CCT
-recovered pasa_asmbl_13732.p1, internal, 159070, 159142
-recovered pasa_asmbl_13732.p1, internal, 159947, 160108
Valid prediction for snap_scaffold_14-snap.3310-T1
Valid prediction for Augustus_model.g24299.t1
Couldn't classify 101070, 101159
Sorry, prediction pasa_asmbl_13734.p1 fails validation.
(AAG)	 GC	101070-101159	GT	AGG
(AAG)	 AG	101262-101360	GT	AGG
(CTC)	 AG	101627-101968	TA	AGT
-recovered pasa_asmbl_13734.p1, terminal, 101627, 101968
-recovered pasa_asmbl_13734.p1, internal, 101262, 101360
Valid prediction for snap_scaffold_14-snap.3315-T1
Valid prediction for snap_scaffold_14-snap.3320-T1
Valid prediction for snap_scaffold_14-snap.3335-T1
Valid prediction for snap_scaffold_14-snap.3333-T1
Valid prediction for snap_scaffold_14-snap.3338-T1
Valid prediction for CodingQuarry_transcript_15912-T1
Valid prediction for GeneMark_model.61973_t
Valid prediction for GeneMark_model.61978_t
Valid prediction for GlimmerHMM_glimmerT_36089-T1
Couldn't classify 163894, 165180
Sorry, prediction pasa_asmbl_13731.p1 fails validation.
(CCT)	 AG	163894-165180	GC	GGG
-recovered pasa_asmbl_13731.p1, internal, 163894, 165180
Valid prediction for pasa_asmbl_13744.p1
Valid prediction for snap_scaffold_14-snap.3312-T1
Valid prediction for Augustus_model.g24309.t1
Valid prediction for HiQ_model.g24312.t1
Valid prediction for GeneMark_model.61935_t
Valid prediction for GeneMark_model.61943_t
Couldn't classify 172165, 172293
Sorry, prediction pasa_asmbl_13726.p2 fails validation.
(GCG)	 AA	172165-172293	GT	AGG
(GAC)	 AG	172429-172524	GT	AGG
(ACT)	 AG	172897-173031	CA	GAC
-recovered pasa_asmbl_13726.p2, terminal, 172897, 173031
-recovered pasa_asmbl_13726.p2, internal, 172429, 172524
Valid prediction for GeneMark_model.61940_t
Valid prediction for GlimmerHMM_glimmerT_36104-T1
Valid prediction for GeneMark_model.61925_t
Valid prediction for GeneMark_model.61958_t
Valid prediction for GeneMark_model.61941_t
Valid prediction for snap_scaffold_14-snap.3306-T1
Valid prediction for snap_scaffold_14-snap.3318-T1
Valid prediction for GeneMark_model.61962_t
Valid prediction for snap_scaffold_14-snap.3322-T1
Valid prediction for snap_scaffold_14-snap.3302-T1
Valid prediction for GeneMark_model.61924_t
Valid prediction for snap_scaffold_14-snap.3337-T1
Valid prediction for HiQ_model.g24298.t1
Valid prediction for snap_scaffold_14-snap.3317-T1
Valid prediction for GeneMark_model.61971_t
Valid prediction for snap_scaffold_14-snap.3298-T1
Couldn't classify 167366, 167482
Couldn't classify 169582, 170056
Sorry, prediction pasa_asmbl_13727.p1 fails validation.
(GAG)	 AG	167366-167482	GT	AGG
(ATG)	 AG	168025-168141	GT	ACG
(TAT)	 AG	168718-168851	GT	AGG
(AAG)	 AG	169582-170056	GA	GTG
-recovered pasa_asmbl_13727.p1, initial, 168025, 168141
-recovered pasa_asmbl_13727.p1, internal, 167366, 167482
-recovered pasa_asmbl_13727.p1, internal, 168025, 168141
-recovered pasa_asmbl_13727.p1, internal, 168718, 168851
Valid prediction for GlimmerHMM_glimmerT_36088-T1
Valid prediction for GlimmerHMM_glimmerT_36098-T1
Valid prediction for snap_scaffold_14-snap.3305-T1
Valid prediction for GeneMark_model.61951_t
Valid prediction for Augustus_model.g24305.t1
Valid prediction for GlimmerHMM_glimmerT_36097-T1
Valid prediction for GeneMark_model.61966_t
Couldn't classify 175359, 175512
Couldn't classify 175874, 176044
Sorry, prediction CodingQuarry_transcript_15913-T1 fails validation.
(ATG)	 CC	175359-175512	TC	TCT
(AGG)	 CC	175874-176044	GT	GGG
(GTT)	 AG	176508-176563	GT	GAG
(GGA)	 AG	176821-176881	GT	AGG
(GAG)	 AG	177085-177162	GT	AGG
(ATG)	 AG	177316-177510	GT	CAG
(AGA)	 AG	178002-178092	GT	CGG
(CCC)	 AG	178291-178580	GT	GGG
(GAC)	 AG	178731-178849	GT	AGG
(GTG)	 AG	179316-179441	AG	GAA
add_exon() Sorry, CodingQuarry_transcript_15913-T1 177316-177510-initial-1 is invalid.
-recovered CodingQuarry_transcript_15913-T1, initial, 177316, 177510
-recovered CodingQuarry_transcript_15913-T1, terminal, 179316, 179441
-recovered CodingQuarry_transcript_15913-T1, internal, 176508, 176563
-recovered CodingQuarry_transcript_15913-T1, internal, 176821, 176881
-recovered CodingQuarry_transcript_15913-T1, internal, 177085, 177162
-recovered CodingQuarry_transcript_15913-T1, internal, 177316, 177510
-recovered CodingQuarry_transcript_15913-T1, internal, 178002, 178092
-recovered CodingQuarry_transcript_15913-T1, internal, 178291, 178580
-recovered CodingQuarry_transcript_15913-T1, internal, 178731, 178849
Valid prediction for GeneMark_model.61960_t
Valid prediction for snap_scaffold_14-snap.3340-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_14-snap.3329-T1
Valid prediction for CodingQuarry_transcript_15918-T1
Valid prediction for HiQ_model.g24295.t1
Valid prediction for snap_scaffold_14-snap.3300-T1
Valid prediction for GeneMark_model.61932_t
Valid prediction for GeneMark_model.61975_t
Valid prediction for pasa_asmbl_13767.p1
Valid prediction for GeneMark_model.61949_t
Valid prediction for GlimmerHMM_glimmerT_36093-T1
Valid prediction for snap_scaffold_14-snap.3342-T1
Valid prediction for pasa_asmbl_13723.p1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 104365, rend_intergenic: 104362  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 6265, rend_intergenic: 4052  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 7763, rend_intergenic: 7359  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12271, rend_intergenic: 9122  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23289, rend_intergenic: 20534  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39706, rend_intergenic: 27279  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48655, rend_intergenic: 46680  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64144, rend_intergenic: 50696  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74972, rend_intergenic: 69895  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76567, rend_intergenic: 75260  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88517, rend_intergenic: 77771  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91472, rend_intergenic: 90346  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103039, rend_intergenic: 91675  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133550, rend_intergenic: 132092  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147099, rend_intergenic: 135608  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157454, rend_intergenic: 147152  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171481, rend_intergenic: 169976  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174968, rend_intergenic: 171593  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 184031, rend_intergenic: 179635  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185665, rend_intergenic: 184459  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 197296, rend_intergenic: 192083  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 198629
-exon list size: 899


building trellis

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25.4    
25.5    
25.6    
25.7    
25.9    
26.0    
26.1    
26.2    
26.3    
26.4    
26.5    
26.6    
26.7    
26.9    
27.0    
27.1    
27.2    
27.3    
27.4    
27.5    
27.6    
27.7    
27.9    
28.0    
28.1    
28.2    
28.3    
28.4    
28.5    
28.6    
28.7    
28.9    
29.0    
29.1    
29.2    
29.3    
29.4    
29.5    
29.6    
29.7    
29.9    
30.0    
30.1    
30.2    
30.3    
30.4    
30.5    
30.6    
30.7    
30.9    
31.0    
31.1    
31.2    
31.3    
31.4    
31.5    
31.6    
31.7    
31.9    
32.0    
32.1    
32.2    
32.3    
32.4    
32.5    
32.6    
32.7    
32.9    
33.0    
33.1    
33.2    
33.3    
33.4    
33.5    
33.6    
33.7    
33.9    
34.0    
34.1    
34.2    
34.3    
34.4    
34.5    
34.6    
34.7    
34.9    
35.0    
35.1    
35.2    
35.3    
35.4    
35.5    
35.6    
35.7    
35.8    
36.0    
36.1    
36.2    
36.3    
36.4    
36.5    
36.6    
36.7    
36.8    
37.0    
37.1    
37.2    
37.3    
37.4    
37.5    
37.6    
37.7    
37.8    
38.0    
38.1    
38.2    
38.3    
38.4    
38.5    
38.6    
38.7    
38.8    
39.0    
39.1    
39.2    
39.3    
39.4    
39.5    
39.6    
39.7    
39.8    
40.0    
40.1    
40.2    
40.3    
40.4    
40.5    
40.6    
40.7    
40.8    
41.0    
41.1    
41.2    
41.3    
41.4    
41.5    
41.6    
41.7    
41.8    
42.0    
42.1    
42.2    
42.3    
42.4    
42.5    
42.6    
42.7    
42.8    
43.0    
43.1    
43.2    
43.3    
43.4    
43.5    
43.6    
43.7    
43.8    
44.0    
44.1    
44.2    
44.3    
44.4    
44.5    
44.6    
44.7    
44.8    
45.0    
45.1    
45.2    
45.3    
45.4    
45.5    
45.6    
45.7    
45.8    
45.9    
46.1    
46.2    
46.3    
46.4    
46.5    
46.6    
46.7    
46.8    
46.9    
47.1    
47.2    
47.3    
47.4    
47.5    
47.6    
47.7    
47.8    
47.9    
48.1    
48.2    
48.3    
48.4    
48.5    
48.6    
48.7    
48.8    
48.9    
49.1    
49.2    
49.3    
49.4    
49.5    
49.6    
49.7    
49.8    
49.9    
50.1    
50.2    
50.3    
50.4    
50.5    
50.6    
50.7    
50.8    
50.9    
51.1    
51.2    
51.3    
51.4    
51.5    
51.6    
51.7    
51.8    
51.9    
52.1    
52.2    
52.3    
52.4    
52.5    
52.6    
52.7    
52.8    
52.9    
53.1    
53.2    
53.3    
53.4    
53.5    
53.6    
53.7    
53.8    
53.9    
54.1    
54.2    
54.3    
54.4    
54.5    
54.6    
54.7    
54.8    
54.9    
55.0    
55.2    
55.3    
55.4    
55.5    
55.6    
55.7    
55.8    
55.9    
56.0    
56.2    
56.3    
56.4    
56.5    
56.6    
56.7    
56.8    
56.9    
57.0    
57.2    
57.3    
57.4    
57.5    
57.6    
57.7    
57.8    
57.9    
58.0    
58.2    
58.3    
58.4    
58.5    
58.6    
58.7    
58.8    
58.9    
59.0    
59.2    
59.3    
59.4    
59.5    
59.6    
59.7    
59.8    
59.9    
60.0    
60.2    
60.3    
60.4    
60.5    
60.6    
60.7    
60.8    
60.9    
61.0    
61.2    
61.3    
61.4    
61.5    
61.6    
61.7    
61.8    
61.9    
62.0    
62.2    
62.3    
62.4    
62.5    
62.6    
62.7    
62.8    
62.9    
63.0    
63.2    
63.3    
63.4    
63.5    
63.6    
63.7    
63.8    
63.9    
64.0    
64.2    
64.3    
64.4    
64.5    
64.6    
64.7    
64.8    
64.9    
65.0    
65.1    
65.3    
65.4    
65.5    
65.6    
65.7    
65.8    
65.9    
66.0    
66.1    
66.3    
66.4    
66.5    
66.6    
66.7    
66.8    
66.9    
67.0    
67.1    
67.3    
67.4    
67.5    
67.6    
67.7    
67.8    
67.9    
68.0    
68.1    
68.3    
68.4    
68.5    
68.6    
68.7    
68.8    
68.9    
69.0    
69.1    
69.3    
69.4    
69.5    
69.6    
69.7    
69.8    
69.9    
70.0    
70.1    
70.3    
70.4    
70.5    
70.6    
70.7    
70.8    
70.9    
71.0    
71.1    
71.3    
71.4    
71.5    
71.6    
71.7    
71.8    
71.9    
72.0    
72.1    
72.3    
72.4    
72.5    
72.6    
72.7    
72.8    
72.9    
73.0    
73.1    
73.3    
73.4    
73.5    
73.6    
73.7    
73.8    
73.9    
74.0    
74.1    
74.3    
74.4    
74.5    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.2    
75.4    
75.5    
75.6    
75.7    
75.8    
75.9    
76.0    
76.1    
76.2    
76.4    
76.5    
76.6    
76.7    
76.8    
76.9    
77.0    
77.1    
77.2    
77.4    
77.5    
77.6    
77.7    
77.8    
77.9    
78.0    
78.1    
78.2    
78.4    
78.5    
78.6    
78.7    
78.8    
78.9    
79.0    
79.1    
79.2    
79.4    
79.5    
79.6    
79.7    
79.8    
79.9    
80.0    
80.1    
80.2    
80.4    
80.5    
80.6    
80.7    
80.8    
80.9    
81.0    
81.1    
81.2    
81.4    
81.5    
81.6    
81.7    
81.8    
81.9    
82.0    
82.1    
82.2    
82.4    
82.5    
82.6    
82.7    
82.8    
82.9    
83.0    
83.1    
83.2    
83.4    
83.5    
83.6    
83.7    
83.8    
83.9    
84.0    
84.1    
84.2    
84.4    
84.5    
84.6    
84.7    
84.8    
84.9    
85.0    
85.1    
85.2    
85.3    
85.5    
85.6    
85.7    
85.8    
85.9    
86.0    
86.1    
86.2    
86.3    
86.5    
86.6    
86.7    
86.8    
86.9    
87.0    
87.1    
87.2    
87.3    
87.5    
87.6    
87.7    
87.8    
87.9    
88.0    
88.1    
88.2    
88.3    
88.5    
88.6    
88.7    
88.8    
88.9    
89.0    
89.1    
89.2    
89.3    
89.5    
89.6    
89.7    
89.8    
89.9    
90.0    
90.1    
90.2    
90.3    
90.5    
90.6    
90.7    
90.8    
90.9    
91.0    
91.1    
91.2    
91.3    
91.5    
91.6    
91.7    
91.8    
91.9    
92.0    
92.1    
92.2    
92.3    
92.5    
92.6    
92.7    
92.8    
92.9    
93.0    
93.1    
93.2    
93.3    
93.5    
93.6    
93.7    
93.8    
93.9    
94.0    
94.1    
94.2    
94.3    
94.5    
94.6    
94.7    
94.8    
94.9    
95.0    
95.1    
95.2    
95.3    
95.4    
95.6    
95.7    
95.8    
95.9    
96.0    
96.1    
96.2    
96.3    
96.4    
96.6    
96.7    
96.8    
96.9    
97.0    
97.1    
97.2    
97.3    
97.4    
97.6    
97.7    
97.8    
97.9    
98.0    
98.1    
98.2    
98.3    
98.4    
98.6    
98.7    
98.8    
98.9    
99.0    
99.1    
99.2    
99.3    
99.4    
99.6    
99.7    
99.8    
99.9    
-found 32 predictions from path traversal
Error with prediction: GlimmerHMM lend_intergenic: 104365, rend_intergenic: 104362  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 6265, rend_intergenic: 4052  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 7763, rend_intergenic: 7359  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12271, rend_intergenic: 9122  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23289, rend_intergenic: 20534  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39706, rend_intergenic: 27279  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48655, rend_intergenic: 46680  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64144, rend_intergenic: 50696  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74972, rend_intergenic: 69895  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76567, rend_intergenic: 75260  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88517, rend_intergenic: 77771  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91472, rend_intergenic: 90346  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103039, rend_intergenic: 91675  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133550, rend_intergenic: 132092  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147099, rend_intergenic: 135608  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157454, rend_intergenic: 147152  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171481, rend_intergenic: 169976  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174968, rend_intergenic: 171593  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 184031, rend_intergenic: 179635  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185665, rend_intergenic: 184459  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 197296, rend_intergenic: 192083  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 25 predictions persist after filtering for low support