-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_14/scaffold_14_12842248-12911528

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_35665-T1
Valid prediction for GlimmerHMM_glimmerT_35659-T1
Valid prediction for snap_scaffold_14-snap.2646-T1
Valid prediction for GeneMark_model.61124_t
Valid prediction for GlimmerHMM_glimmerT_35663-T1
Valid prediction for snap_scaffold_14-snap.2653-T1
Valid prediction for GeneMark_model.61126_t
Valid prediction for snap_scaffold_14-snap.2643-T1
Valid prediction for GeneMark_model.61134_t
Valid prediction for GlimmerHMM_glimmerT_35661-T1
Valid prediction for GeneMark_model.61132_t
Valid prediction for GeneMark_model.61136_t
Valid prediction for GeneMark_model.61138_t
Valid prediction for GeneMark_model.61130_t
Valid prediction for snap_scaffold_14-snap.2656-T1
Valid prediction for Augustus_model.g24014.t1
Valid prediction for snap_scaffold_14-snap.2655-T1
Valid prediction for GeneMark_model.61141_t
Valid prediction for snap_scaffold_14-snap.2645-T1
Valid prediction for snap_scaffold_14-snap.2650-T1
Valid prediction for GlimmerHMM_glimmerT_35666-T1
Valid prediction for GeneMark_model.61142_t
Valid prediction for snap_scaffold_14-snap.2641-T1
Valid prediction for GeneMark_model.61122_t
Valid prediction for GeneMark_model.61128_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_14-snap.2652-T1
Valid prediction for snap_scaffold_14-snap.2640-T1
Valid prediction for GeneMark_model.61121_t
Valid prediction for GeneMark_model.61120_t
Valid prediction for GeneMark_model.61137_t
Couldn't classify 61774, 62044
Sorry, prediction pasa_asmbl_13606.p2 fails validation.
(CCA)	 AG	61774-62044	GT	GGG
(GGG)	 AG	62337-62491	CG	AAC
-recovered pasa_asmbl_13606.p2, terminal, 62337, 62491
-recovered pasa_asmbl_13606.p2, internal, 61774, 62044
Valid prediction for GeneMark_model.61123_t
Valid prediction for snap_scaffold_14-snap.2649-T1
Valid prediction for GeneMark_model.61135_t
Valid prediction for GeneMark_model.61127_t
Valid prediction for GlimmerHMM_glimmerT_35662-T1
Valid prediction for Augustus_model.g24012.t1
Valid prediction for GeneMark_model.61131_t
Valid prediction for GlimmerHMM_glimmerT_35658-T1
Valid prediction for snap_scaffold_14-snap.2644-T1
Valid prediction for GlimmerHMM_glimmerT_35664-T1
Valid prediction for snap_scaffold_14-snap.2654-T1
Valid prediction for GeneMark_model.61133_t
Valid prediction for GeneMark_model.61140_t
Valid prediction for GeneMark_model.61139_t
Valid prediction for GeneMark_model.61129_t
Valid prediction for GlimmerHMM_glimmerT_35660-T1
Valid prediction for snap_scaffold_14-snap.2648-T1
Valid prediction for snap_scaffold_14-snap.2651-T1
Valid prediction for Augustus_model.g24013.t1
Valid prediction for snap_scaffold_14-snap.2639-T1
Valid prediction for snap_scaffold_14-snap.2642-T1
Valid prediction for snap_scaffold_14-snap.2647-T1
Valid prediction for snap_scaffold_14-snap.2638-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 24711, rend_intergenic: 19318  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24873, rend_intergenic: 24748  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34244, rend_intergenic: 24953  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40754, rend_intergenic: 36502  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46303, rend_intergenic: 42421  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66632, rend_intergenic: 61039  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 69281
-exon list size: 269


building trellis

0.4    
0.7    
1.1    
1.5    
1.8    
2.2    
2.6    
3.0    
3.3    
3.7    
4.1    
4.4    
4.8    
5.2    
5.5    
5.9    
6.3    
6.6    
7.0    
7.4    
7.7    
8.1    
8.5    
8.9    
9.2    
9.6    
10.0    
10.3    
10.7    
11.1    
11.4    
11.8    
12.2    
12.5    
12.9    
13.3    
13.7    
14.0    
14.4    
14.8    
15.1    
15.5    
15.9    
16.2    
16.6    
17.0    
17.3    
17.7    
18.1    
18.5    
18.8    
19.2    
19.6    
19.9    
20.3    
20.7    
21.0    
21.4    
21.8    
22.1    
22.5    
22.9    
23.2    
23.6    
24.0    
24.4    
24.7    
25.1    
25.5    
25.8    
26.2    
26.6    
26.9    
27.3    
27.7    
28.0    
28.4    
28.8    
29.2    
29.5    
29.9    
30.3    
30.6    
31.0    
31.4    
31.7    
32.1    
32.5    
32.8    
33.2    
33.6    
33.9    
34.3    
34.7    
35.1    
35.4    
35.8    
36.2    
36.5    
36.9    
37.3    
37.6    
38.0    
38.4    
38.7    
39.1    
39.5    
39.9    
40.2    
40.6    
41.0    
41.3    
41.7    
42.1    
42.4    
42.8    
43.2    
43.5    
43.9    
44.3    
44.6    
45.0    
45.4    
45.8    
46.1    
46.5    
46.9    
47.2    
47.6    
48.0    
48.3    
48.7    
49.1    
49.4    
49.8    
50.2    
50.6    
50.9    
51.3    
51.7    
52.0    
52.4    
52.8    
53.1    
53.5    
53.9    
54.2    
54.6    
55.0    
55.4    
55.7    
56.1    
56.5    
56.8    
57.2    
57.6    
57.9    
58.3    
58.7    
59.0    
59.4    
59.8    
60.1    
60.5    
60.9    
61.3    
61.6    
62.0    
62.4    
62.7    
63.1    
63.5    
63.8    
64.2    
64.6    
64.9    
65.3    
65.7    
66.1    
66.4    
66.8    
67.2    
67.5    
67.9    
68.3    
68.6    
69.0    
69.4    
69.7    
70.1    
70.5    
70.8    
71.2    
71.6    
72.0    
72.3    
72.7    
73.1    
73.4    
73.8    
74.2    
74.5    
74.9    
75.3    
75.6    
76.0    
76.4    
76.8    
77.1    
77.5    
77.9    
78.2    
78.6    
79.0    
79.3    
79.7    
80.1    
80.4    
80.8    
81.2    
81.5    
81.9    
82.3    
82.7    
83.0    
83.4    
83.8    
84.1    
84.5    
84.9    
85.2    
85.6    
86.0    
86.3    
86.7    
87.1    
87.5    
87.8    
88.2    
88.6    
88.9    
89.3    
89.7    
90.0    
90.4    
90.8    
91.1    
91.5    
91.9    
92.3    
92.6    
93.0    
93.4    
93.7    
94.1    
94.5    
94.8    
95.2    
95.6    
95.9    
96.3    
96.7    
97.0    
97.4    
97.8    
98.2    
98.5    
98.9    
99.3    
99.6    
-found 13 predictions from path traversal
Error with prediction: snap lend_intergenic: 24711, rend_intergenic: 19318  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24873, rend_intergenic: 24748  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34244, rend_intergenic: 24953  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40754, rend_intergenic: 36502  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46303, rend_intergenic: 42421  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66632, rend_intergenic: 61039  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 5 predictions persist after filtering for low support