-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_14/scaffold_14_11513892-11746227

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for CodingQuarry_transcript_15807-T1
Valid prediction for GeneMark_model.60820_t
Valid prediction for GeneMark_model.60829_t
Valid prediction for snap_scaffold_14-snap.2376-T1
Valid prediction for pasa_asmbl_12371.p1
Valid prediction for snap_scaffold_14-snap.2392-T1
Valid prediction for snap_scaffold_14-snap.2369-T1
Valid prediction for HiQ_model.g23855.t1
Valid prediction for GlimmerHMM_glimmerT_35483-T1
Valid prediction for GeneMark_model.60837_t
Valid prediction for snap_scaffold_14-snap.2367-T1
Valid prediction for snap_scaffold_14-snap.2364-T1
Valid prediction for GlimmerHMM_glimmerT_35454-T1
Valid prediction for Augustus_model.g23870.t1
Valid prediction for CodingQuarry_transcript_15799-T1
Valid prediction for GeneMark_model.60857_t
Valid prediction for Augustus_model.g23884.t1
Valid prediction for GlimmerHMM_glimmerT_35489-T1
Valid prediction for snap_scaffold_14-snap.2395-T1
Valid prediction for pasa_asmbl_12376.p1
Valid prediction for GeneMark_model.60859_t
Valid prediction for GeneMark_model.60813_t
Valid prediction for pasa_asmbl_12367.p1
Valid prediction for snap_scaffold_14-snap.2396-T1
Valid prediction for GlimmerHMM_glimmerT_35486-T1
Valid prediction for GlimmerHMM_glimmerT_35478-T1
Valid prediction for pasa_asmbl_12368.p1
Valid prediction for snap_scaffold_14-snap.2390-T1
Valid prediction for Augustus_model.g23883.t1
Valid prediction for snap_scaffold_14-snap.2397-T1
Valid prediction for snap_scaffold_14-snap.2400-T1
Valid prediction for Augustus_model.g23885.t1
Valid prediction for snap_scaffold_14-snap.2371-T1
Valid prediction for snap_scaffold_14-snap.2399-T1
Valid prediction for HiQ_model.g23863.t1
Valid prediction for snap_scaffold_14-snap.2358-T1
Valid prediction for snap_scaffold_14-snap.2378-T1
Valid prediction for GlimmerHMM_glimmerT_35467-T1
Valid prediction for CodingQuarry_transcript_15798-T1
Valid prediction for snap_scaffold_14-snap.2382-T1
Valid prediction for GlimmerHMM_glimmerT_35462-T1
Valid prediction for GlimmerHMM_glimmerT_35487-T1
Couldn't classify 203305, 203610
Sorry, prediction pasa_asmbl_12381.p1 fails validation.
(CCG)	 AA	203305-203610	CG	GAC
Valid prediction for snap_scaffold_14-snap.2393-T1
Valid prediction for GeneMark_model.60844_t
Valid prediction for Augustus_model.g23882.t1
Valid prediction for snap_scaffold_14-snap.2398-T1
Valid prediction for GlimmerHMM_glimmerT_35488-T1
Valid prediction for HiQ_model.g23865.t1
Valid prediction for GlimmerHMM_glimmerT_35463-T1
Valid prediction for GlimmerHMM_glimmerT_35465-T1
Valid prediction for snap_scaffold_14-snap.2359-T1
Valid prediction for HiQ_model.g23877.t1
Valid prediction for GeneMark_model.60816_t
Valid prediction for pasa_asmbl_12366.p1
Valid prediction for Augustus_model.g23886.t1
Valid prediction for GeneMark_model.60849_t
Valid prediction for GlimmerHMM_glimmerT_35455-T1
Valid prediction for CodingQuarry_transcript_15800-T1
Valid prediction for snap_scaffold_14-snap.2381-T1
Valid prediction for pasa_asmbl_12365.p1
Couldn't classify 51391, 51498
Sorry, prediction pasa_asmbl_12372.p1 fails validation.
(ATT)	 AG	51391-51498	GT	AGG
(GCC)	 AG	51578-51729	GT	GGG
(CGA)	 AG	51892-52033	GT	AGG
(GTT)	 AG	52153-52263	GT	AAG
(ATT)	 AG	52375-52443	GT	AGG
(ATT)	 AG	52888-52938	GC	AAG
-recovered pasa_asmbl_12372.p1, terminal, 52888, 52938
-recovered pasa_asmbl_12372.p1, internal, 51391, 51498
-recovered pasa_asmbl_12372.p1, internal, 51578, 51729
-recovered pasa_asmbl_12372.p1, internal, 51892, 52033
-recovered pasa_asmbl_12372.p1, internal, 52153, 52263
-recovered pasa_asmbl_12372.p1, internal, 52375, 52443
-recovered pasa_asmbl_12372.p1, internal, 52888, 52938
Valid prediction for GlimmerHMM_glimmerT_35460-T1
Valid prediction for GlimmerHMM_glimmerT_35481-T1
Valid prediction for GeneMark_model.60860_t
Valid prediction for GeneMark_model.60819_t
Valid prediction for HiQ_model.g23861.t1
Valid prediction for GeneMark_model.60853_t
Valid prediction for snap_scaffold_14-snap.2401-T1
Valid prediction for pasa_asmbl_12379.p1
Valid prediction for pasa_asmbl_12380.p1
Valid prediction for snap_scaffold_14-snap.2384-T1
Valid prediction for Augustus_model.g23867.t1
Valid prediction for snap_scaffold_14-snap.2380-T1
Valid prediction for GeneMark_model.60823_t
Valid prediction for snap_scaffold_14-snap.2385-T1
Valid prediction for GeneMark_model.60852_t
Valid prediction for GeneMark_model.60840_t
Valid prediction for GlimmerHMM_glimmerT_35474-T1
Valid prediction for GeneMark_model.60833_t
Valid prediction for GlimmerHMM_glimmerT_35480-T1
Valid prediction for HiQ_model.g23858.t1
Valid prediction for GlimmerHMM_glimmerT_35457-T1
Valid prediction for HiQ_model.g23874.t1
Valid prediction for Augustus_model.g23887.t1
Valid prediction for snap_scaffold_14-snap.2405-T1
Valid prediction for GeneMark_model.60825_t
Valid prediction for snap_scaffold_14-snap.2379-T1
Valid prediction for HiQ_model.g23860.t1
Valid prediction for HiQ_model.g23880.t1
Valid prediction for GeneMark_model.60834_t
Valid prediction for snap_scaffold_14-snap.2365-T1
Valid prediction for Augustus_model.g23869.t1
Couldn't classify 125249, 125582
Sorry, prediction pasa_asmbl_12378.p1 fails validation.
(GTC)	 TC	125249-125582	GT	TGG
(GTT)	 AG	125655-125911	GG	GAG
-recovered pasa_asmbl_12378.p1, terminal, 125655, 125911
Valid prediction for GlimmerHMM_glimmerT_35469-T1
Valid prediction for snap_scaffold_14-snap.2363-T1
Valid prediction for GlimmerHMM_glimmerT_35484-T1
Valid prediction for snap_scaffold_14-snap.2366-T1
Valid prediction for GeneMark_model.60855_t
Valid prediction for CodingQuarry_transcript_15802-T1
Valid prediction for snap_scaffold_14-snap.2403-T1
Valid prediction for GlimmerHMM_glimmerT_35476-T1
Valid prediction for GeneMark_model.60846_t
Valid prediction for GlimmerHMM_glimmerT_35456-T1
Valid prediction for GeneMark_model.60831_t
Valid prediction for GlimmerHMM_glimmerT_35471-T1
Valid prediction for GeneMark_model.60851_t
Valid prediction for CodingQuarry_transcript_15797-T1
Valid prediction for CodingQuarry_transcript_15794-T1
Valid prediction for GeneMark_model.60818_t
Valid prediction for GeneMark_model.60827_t
Valid prediction for Augustus_model.g23879.t1
Valid prediction for snap_scaffold_14-snap.2374-T1
Valid prediction for GlimmerHMM_glimmerT_35453-T1
Valid prediction for HiQ_model.g23859.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for pasa_asmbl_13505.p1
Valid prediction for GlimmerHMM_glimmerT_35482-T1
Couldn't classify 109282, 109587
Sorry, prediction pasa_asmbl_13491.p1 fails validation.
(ATC)	 AC	109282-109587	TC	AAT
Couldn't classify 182806, 183759
Sorry, prediction pasa_asmbl_13476.p1 fails validation.
(CCT)	 CT	182806-183759	GT	AGG
(TTC)	 AG	186145-186308	GT	AGG
(GTG)	 AG	186404-186545	AC	AAA
-recovered pasa_asmbl_13476.p1, terminal, 186404, 186545
-recovered pasa_asmbl_13476.p1, internal, 186145, 186308
Valid prediction for GeneMark_model.60830_t
Valid prediction for snap_scaffold_14-snap.2372-T1
Valid prediction for GlimmerHMM_glimmerT_35464-T1
Valid prediction for CodingQuarry_transcript_15801-T1
Valid prediction for pasa_asmbl_13508.p1
Valid prediction for GeneMark_model.60824_t
Valid prediction for snap_scaffold_14-snap.2368-T1
Valid prediction for Augustus_model.g23873.t1
Valid prediction for HiQ_model.g23857.t1
Valid prediction for CodingQuarry_transcript_15804-T1
Valid prediction for snap_scaffold_14-snap.2404-T1
Valid prediction for GeneMark_model.60847_t
Valid prediction for GlimmerHMM_glimmerT_35470-T1
Couldn't classify 217323, 217355
Couldn't classify 219647, 219662
Sorry, prediction pasa_asmbl_13473.p1 fails validation.
(CGA)	 CT	217323-217355	GT	AGG
(TTA)	 AG	217523-217692	GT	ACG
(GGG)	 AG	217827-217908	GT	AGG
(GAC)	 AG	217999-218132	GT	AGG
(CTC)	 AG	218251-218428	GT	AGG
(GAA)	 AG	218630-218719	GT	AGG
(CTC)	 AG	219035-219230	GT	AGG
(AGG)	 AG	219380-219485	GT	CAG
(GAA)	 AG	219647-219662	TC	GAT
-recovered pasa_asmbl_13473.p1, internal, 217523, 217692
-recovered pasa_asmbl_13473.p1, internal, 217827, 217908
-recovered pasa_asmbl_13473.p1, internal, 217999, 218132
-recovered pasa_asmbl_13473.p1, internal, 218251, 218428
-recovered pasa_asmbl_13473.p1, internal, 218630, 218719
-recovered pasa_asmbl_13473.p1, internal, 219035, 219230
-recovered pasa_asmbl_13473.p1, internal, 219380, 219485
Valid prediction for snap_scaffold_14-snap.2388-T1
Valid prediction for Augustus_model.g23876.t1
Valid prediction for GeneMark_model.60838_t
Valid prediction for pasa_asmbl_13480.p1
Valid prediction for HiQ_model.g23866.t1
Couldn't classify 95583, 95753
Couldn't classify 97128, 97159
Sorry, prediction pasa_asmbl_13496.p1 fails validation.
(GAC)	 CA	95583-95753	GT	AGG
(AAC)	 AG	95880-95967	GT	TGG
(CTG)	 AG	96050-96139	GT	AGG
(GTG)	 AG	97128-97159	CA	GGC
-recovered pasa_asmbl_13496.p1, internal, 95880, 95967
-recovered pasa_asmbl_13496.p1, internal, 96050, 96139
Valid prediction for pasa_asmbl_13477.p1
Valid prediction for snap_scaffold_14-snap.2394-T1
Valid prediction for Augustus_model.g23862.t1
Valid prediction for snap_scaffold_14-snap.2361-T1
Valid prediction for pasa_asmbl_13475.p1
Valid prediction for GeneMark_model.60841_t
Couldn't classify 78100, 78129
Sorry, prediction pasa_asmbl_13502.p1 fails validation.
(ATG)	 AC	76247-76555	GT	AGG
(ATG)	 AG	77430-77615	GT	AGG
(GGT)	 AG	78100-78129	TA	GAT
-recovered pasa_asmbl_13502.p1, initial, 76247, 76555
-recovered pasa_asmbl_13502.p1, initial, 77430, 77615
-recovered pasa_asmbl_13502.p1, internal, 77430, 77615
Valid prediction for CodingQuarry_transcript_15805-T1
Valid prediction for snap_scaffold_14-snap.2375-T1
Valid prediction for GeneMark_model.60845_t
Valid prediction for CodingQuarry_transcript_15808-T1
Valid prediction for snap_scaffold_14-snap.2391-T1
Valid prediction for GlimmerHMM_glimmerT_35458-T1
Valid prediction for GlimmerHMM_glimmerT_35461-T1
Valid prediction for snap_scaffold_14-snap.2386-T1
Valid prediction for GeneMark_model.60822_t
Valid prediction for GeneMark_model.60826_t
Couldn't classify 89653, 92459
Sorry, prediction Augustus_model.g23875.t1 fails validation.
(GAG)	 AA	89653-92459	GT	AGG
(GTG)	 AG	93511-93768	GT	ATG
(GAA)	 AG	93927-94112	GT	AGG
(GTT)	 AG	94197-94337	GT	AGG
(GTG)	 AG	94712-94904	GT	TGG
(ACA)	 AG	95584-95753	GT	AGG
(AAC)	 AG	95880-95967	GT	TGG
(CTG)	 AG	96050-96139	GT	AGG
(GTG)	 AG	96429-96605	GT	AGG
(AAT)	 AG	96758-97020	GT	TGG
(GTG)	 AG	97128-97305	GT	GGG
(GTA)	 AG	97408-97544	GT	AGG
(GGA)	 AG	98438-98607	GT	AGG
(TCA)	 AG	98850-99179	GT	TCG
(GAC)	 AG	99292-99478	GT	AGG
(AGG)	 AG	99605-99774	GT	CGG
(GAT)	 AG	99899-100050	GT	AGG
(TGG)	 AG	100176-100394	GT	CTG
(CTG)	 AG	100622-100786	GT	AGG
(GTA)	 AG	100912-101511	GT	AGG
(CCC)	 AG	101663-101808	GT	TGG
(CCT)	 AG	101989-102299	GT	CGG
(GTT)	 AG	102466-102668	GT	TGG
(GAA)	 AG	102841-103010	GT	AGG
(TCC)	 AG	103277-103473	GT	AGG
(GCT)	 AG	103625-103739	GT	AGG
(CAA)	 AG	103832-103957	GT	AGG
(GCC)	 AG	104127-104309	GT	AGG
(CTC)	 AG	104439-104522	GT	AGG
(GAA)	 AG	104618-106199	GT	AGG
(CTG)	 AG	107070-109129	TG	GAT
-recovered Augustus_model.g23875.t1, terminal, 107070, 109129
-recovered Augustus_model.g23875.t1, internal, 93511, 93768
-recovered Augustus_model.g23875.t1, internal, 93927, 94112
-recovered Augustus_model.g23875.t1, internal, 94197, 94337
-recovered Augustus_model.g23875.t1, internal, 94712, 94904
-recovered Augustus_model.g23875.t1, internal, 95584, 95753
-recovered Augustus_model.g23875.t1, internal, 95880, 95967
-recovered Augustus_model.g23875.t1, internal, 96050, 96139
-recovered Augustus_model.g23875.t1, internal, 96429, 96605
-recovered Augustus_model.g23875.t1, internal, 96758, 97020
-recovered Augustus_model.g23875.t1, internal, 97128, 97305
-recovered Augustus_model.g23875.t1, internal, 97408, 97544
-recovered Augustus_model.g23875.t1, internal, 98438, 98607
-recovered Augustus_model.g23875.t1, internal, 98850, 99179
-recovered Augustus_model.g23875.t1, internal, 99292, 99478
-recovered Augustus_model.g23875.t1, internal, 99605, 99774
-recovered Augustus_model.g23875.t1, internal, 99899, 100050
-recovered Augustus_model.g23875.t1, internal, 100176, 100394
-recovered Augustus_model.g23875.t1, internal, 100622, 100786
-recovered Augustus_model.g23875.t1, internal, 100912, 101511
-recovered Augustus_model.g23875.t1, internal, 101663, 101808
-recovered Augustus_model.g23875.t1, internal, 101989, 102299
-recovered Augustus_model.g23875.t1, internal, 102466, 102668
-recovered Augustus_model.g23875.t1, internal, 102841, 103010
-recovered Augustus_model.g23875.t1, internal, 103277, 103473
-recovered Augustus_model.g23875.t1, internal, 103625, 103739
-recovered Augustus_model.g23875.t1, internal, 103832, 103957
-recovered Augustus_model.g23875.t1, internal, 104127, 104309
-recovered Augustus_model.g23875.t1, internal, 104439, 104522
-recovered Augustus_model.g23875.t1, internal, 104618, 106199
Valid prediction for GeneMark_model.60848_t
Valid prediction for CodingQuarry_transcript_15796-T1
Couldn't classify 105002, 105616
Sorry, prediction pasa_asmbl_13493.p1 fails validation.
(ACA)	 CG	105002-105616	CG	GGC
Valid prediction for GeneMark_model.60817_t
Couldn't classify 102587, 102668
Couldn't classify 103277, 103471
Sorry, prediction pasa_asmbl_13494.p1 fails validation.
(CCT)	 CT	102587-102668	GT	TGG
(GAA)	 AG	102841-103010	GT	AGG
(TCC)	 AG	103277-103471	AG	ACA
-recovered pasa_asmbl_13494.p1, internal, 102841, 103010
Valid prediction for snap_scaffold_14-snap.2370-T1
Valid prediction for GeneMark_model.60839_t
Valid prediction for CodingQuarry_transcript_15811-T1
Valid prediction for GeneMark_model.60854_t
Valid prediction for snap_scaffold_14-snap.2383-T1
Valid prediction for HiQ_model.g23864.t1
Valid prediction for CodingQuarry_transcript_15795-T1
Couldn't classify 143831, 143896
Couldn't classify 145406, 145456
Sorry, prediction pasa_asmbl_13490.p1 fails validation.
(GGG)	 CG	143831-143896	GT	GAG
(GAT)	 AG	144021-144089	GT	CTG
(TTG)	 AG	144198-144279	GT	GGG
(AGA)	 AG	144607-144734	GT	AAG
(GGC)	 AG	145406-145456	TC	CCT
-recovered pasa_asmbl_13490.p1, internal, 144021, 144089
-recovered pasa_asmbl_13490.p1, internal, 144198, 144279
-recovered pasa_asmbl_13490.p1, internal, 144607, 144734
Couldn't classify 98546, 98607
Couldn't classify 98850, 99096
Sorry, prediction pasa_asmbl_13833.p1 fails validation.
(GAG)	 AC	98546-98607	GT	AGG
(TCA)	 AG	98850-99096	CC	TGC
Valid prediction for GeneMark_model.60843_t
Valid prediction for GlimmerHMM_glimmerT_35485-T1
Valid prediction for snap_scaffold_14-snap.2387-T1
Valid prediction for GeneMark_model.60856_t
Couldn't classify 219762, 219815
Sorry, prediction pasa_asmbl_13472.p1 fails validation.
(AAA)	 AC	219762-219815	GT	AGG
(GTT)	 AG	219919-219999	GT	GGG
(GTC)	 AG	220095-220179	GT	AGG
(GTC)	 AG	220303-220417	GT	AGG
(AAA)	 AG	220610-220781	GT	AGG
(TAT)	 AG	221301-221531	TC	AGT
-recovered pasa_asmbl_13472.p1, terminal, 221301, 221531
-recovered pasa_asmbl_13472.p1, internal, 219919, 219999
-recovered pasa_asmbl_13472.p1, internal, 220095, 220179
-recovered pasa_asmbl_13472.p1, internal, 220303, 220417
-recovered pasa_asmbl_13472.p1, internal, 220610, 220781
Valid prediction for Augustus_model.g23872.t1
Couldn't classify 107423, 108007
Sorry, prediction pasa_asmbl_13492.p1 fails validation.
(TCG)	 CA	107423-108007	GC	GGG
Valid prediction for GeneMark_model.60815_t
Valid prediction for GlimmerHMM_glimmerT_35477-T1
Valid prediction for snap_scaffold_14-snap.2362-T1
Valid prediction for Augustus_model.g23868.t1
Valid prediction for Augustus_model.g23878.t1
Couldn't classify 93541, 93768
Couldn't classify 93927, 94010
Sorry, prediction pasa_asmbl_13764.p2 fails validation.
(CCT)	 CG	93541-93768	GT	ATG
(GAA)	 AG	93927-94010	GT	CGG
-recovered pasa_asmbl_13764.p2, internal, 93927, 94010
Valid prediction for GeneMark_model.60858_t
Valid prediction for HiQ_model.g23881.t1
Valid prediction for GeneMark_model.60814_t
Valid prediction for snap_scaffold_14-snap.2373-T1
Couldn't classify 79589, 79864
Sorry, prediction pasa_asmbl_13497.p1 fails validation.
(CAG)	 GT	79589-79864	GT	TGG
(TTT)	 AG	79972-80016	GT	CTG
(TTC)	 AG	80240-80335	GT	AGG
(CCT)	 AG	80638-80721	GT	GGG
(CTA)	 AG	80960-80998	GT	ATG
(AAG)	 AG	81402-81473	GT	AGG
(TTG)	 AG	82538-82703	GT	TGG
(GTG)	 AG	82910-82990	GT	GGG
(ACC)	 AG	83170-83253	GT	GGG
(CGG)	 AG	83399-83612	GT	AGG
(GGA)	 AG	83725-85345	TA	AGT
-recovered pasa_asmbl_13497.p1, terminal, 83725, 85345
-recovered pasa_asmbl_13497.p1, internal, 79972, 80016
-recovered pasa_asmbl_13497.p1, internal, 80240, 80335
-recovered pasa_asmbl_13497.p1, internal, 80638, 80721
-recovered pasa_asmbl_13497.p1, internal, 80960, 80998
-recovered pasa_asmbl_13497.p1, internal, 81402, 81473
-recovered pasa_asmbl_13497.p1, internal, 82538, 82703
-recovered pasa_asmbl_13497.p1, internal, 82910, 82990
-recovered pasa_asmbl_13497.p1, internal, 83170, 83253
-recovered pasa_asmbl_13497.p1, internal, 83399, 83612
Valid prediction for Augustus_model.g23856.t1
Valid prediction for CodingQuarry_transcript_15809-T1
Valid prediction for pasa_asmbl_13796.p1
Couldn't classify 69730, 69731
Sorry, prediction CodingQuarry_transcript_15810-T1 fails validation.
(ATG)	 AC	66278-66934	GT	CGG
(TTG)	 AG	67100-67296	GT	AGG
(GAA)	 AG	67411-67721	GT	CAG
(TCC)	 AG	67848-67912	GT	AGG
(ATG)	 AG	68090-68157	GT	CGG
(ATG)	 AG	68689-68813	GT	TGG
(TGG)	 AG	68899-68971	GT	GAG
(ATG)	 AG	69307-69368	GC	ATG
(GAA)	 AG	69730-69731	AC	GAA
-recovered CodingQuarry_transcript_15810-T1, initial, 66278, 66934
-recovered CodingQuarry_transcript_15810-T1, initial, 68090, 68157
add_exon() Sorry, CodingQuarry_transcript_15810-T1 68689-68813-initial-1 is invalid.
-recovered CodingQuarry_transcript_15810-T1, initial, 68689, 68813
-recovered CodingQuarry_transcript_15810-T1, initial, 69307, 69368
-recovered CodingQuarry_transcript_15810-T1, internal, 67100, 67296
-recovered CodingQuarry_transcript_15810-T1, internal, 67411, 67721
-recovered CodingQuarry_transcript_15810-T1, internal, 67848, 67912
-recovered CodingQuarry_transcript_15810-T1, internal, 68090, 68157
-recovered CodingQuarry_transcript_15810-T1, internal, 68689, 68813
-recovered CodingQuarry_transcript_15810-T1, internal, 68899, 68971
-recovered CodingQuarry_transcript_15810-T1, internal, 69307, 69368
Valid prediction for GeneMark_model.60828_t
Valid prediction for GlimmerHMM_glimmerT_35472-T1
Valid prediction for Augustus_model.g23871.t1
Valid prediction for GeneMark_model.60842_t
Valid prediction for snap_scaffold_14-snap.2360-T1
Valid prediction for snap_scaffold_14-snap.2389-T1
Valid prediction for CodingQuarry_transcript_15806-T1
Valid prediction for snap_scaffold_14-snap.2377-T1
Valid prediction for GeneMark_model.60850_t
Valid prediction for GeneMark_model.60832_t
Valid prediction for GeneMark_model.60836_t
Valid prediction for snap_scaffold_14-snap.2402-T1
Valid prediction for GlimmerHMM_glimmerT_35466-T1
Valid prediction for GlimmerHMM_glimmerT_35468-T1
Valid prediction for GeneMark_model.60835_t
Valid prediction for GlimmerHMM_glimmerT_35459-T1
Valid prediction for GlimmerHMM_glimmerT_35475-T1
Valid prediction for GeneMark_model.60821_t
Valid prediction for CodingQuarry_transcript_15803-T1
Valid prediction for GlimmerHMM_glimmerT_35479-T1
Valid prediction for GlimmerHMM_glimmerT_35473-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 153286, rend_intergenic: 153283  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49492, rend_intergenic: 44985  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84904, rend_intergenic: 80557  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98094, rend_intergenic: 86790  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 226515, rend_intergenic: 222017  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 232336
-exon list size: 758


building trellis

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-found 40 predictions from path traversal
Error with prediction: GlimmerHMM lend_intergenic: 153286, rend_intergenic: 153283  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49492, rend_intergenic: 44985  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84904, rend_intergenic: 80557  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98094, rend_intergenic: 86790  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 226515, rend_intergenic: 222017  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 33 predictions persist after filtering for low support