-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1398

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 19, 107
Couldn't classify 2373, 2423
Sorry, prediction GeneMark_model.109294_t fails validation.
(GGT)	 AG	19-107	GT	GAG
(CCT)	 AG	145-249	GT	CCG
(AGG)	 AG	2373-2423	GT	CAG
-recovered GeneMark_model.109294_t, internal, 19, 107
-recovered GeneMark_model.109294_t, internal, 145, 249
-recovered GeneMark_model.109294_t, internal, 2373, 2423

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 107, 252
Sorry, prediction snap_scaffold_1398-snap.1-T1 fails validation.
(GGG)	 AG	107-252	GT	AAG
(ACA)	 AG	316-509	GT	TGG
(CCC)	 AG	1879-1970	GG	AAG
-recovered snap_scaffold_1398-snap.1-T1, terminal, 1879, 1970
-recovered snap_scaffold_1398-snap.1-T1, internal, 107, 252
-recovered snap_scaffold_1398-snap.1-T1, internal, 316, 509
Valid prediction for Augustus_model.g41661.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2500
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support