-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1397

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 36, 120
Couldn't classify 2388, 2423
Sorry, prediction GeneMark_model.109293_t fails validation.
(CCT)	 AG	36-120	GT	AGG
(AAA)	 AG	255-358	GT	GAG
(GTA)	 AG	1276-1303	GT	AGG
(CCT)	 AG	1340-1357	GT	AGG
(AGG)	 AG	2346-2366	GT	GAG
(CGA)	 AG	2388-2423	GT	AGG
-recovered GeneMark_model.109293_t, internal, 36, 120
-recovered GeneMark_model.109293_t, internal, 255, 358
-recovered GeneMark_model.109293_t, internal, 1276, 1303
-recovered GeneMark_model.109293_t, internal, 1340, 1357
-recovered GeneMark_model.109293_t, internal, 2346, 2366
-recovered GeneMark_model.109293_t, internal, 2388, 2423
Valid prediction for snap_scaffold_1397-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2164, 2397
Sorry, prediction Augustus_model.g41660.t1 fails validation.
(ATG)	 AA	1908-1922	GT	AAG
(AGG)	 AG	2029-2044	GT	TGG
(AGG)	 AG	2164-2397	GT	AGG
-recovered Augustus_model.g41660.t1, initial, 1908, 1922
-recovered Augustus_model.g41660.t1, internal, 2029, 2044
-recovered Augustus_model.g41660.t1, internal, 2164, 2397
Couldn't classify 388, 454
Sorry, prediction GlimmerHMM_glimmerT_62626-T1 fails validation.
(CTG)	 AG	388-454	GT	CGG
(AGG)	 AG	2164-2405	AG	AGA
-recovered GlimmerHMM_glimmerT_62626-T1, terminal, 2164, 2405
-recovered GlimmerHMM_glimmerT_62626-T1, internal, 388, 454

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2500
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support