-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1395

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 37, 117
Sorry, prediction GeneMark_model.109291_t fails validation.
(GGA)	 AG	37-117	GT	GTG
(GGA)	 AG	704-719	GT	AGG
(TCT)	 AG	753-805	GT	GTG
(GAA)	 AG	827-1038	GT	AGG
(AGG)	 AG	1491-1804	AG	GAA
add_exon() Sorry, GeneMark_model.109291_t 827-1038-terminal-2 is invalid.
-recovered GeneMark_model.109291_t, terminal, 827, 1038
-recovered GeneMark_model.109291_t, terminal, 1491, 1804
-recovered GeneMark_model.109291_t, internal, 37, 117
-recovered GeneMark_model.109291_t, internal, 704, 719
-recovered GeneMark_model.109291_t, internal, 753, 805
-recovered GeneMark_model.109291_t, internal, 827, 1038
Valid prediction for GlimmerHMM_glimmerT_62624-T1
Valid prediction for Augustus_model.g41659.t1
Valid prediction for snap_scaffold_1395-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2504
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support