-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1394

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 904, 956
Sorry, prediction Augustus_model.g41658.t1 fails validation.
(GTG)	 AG	904-956	GT	CCG
(GGA)	 AG	1505-1586	GT	TGG
(AGA)	 AG	2148-2222	TC	AAT
-recovered Augustus_model.g41658.t1, terminal, 2148, 2222
-recovered Augustus_model.g41658.t1, internal, 904, 956
-recovered Augustus_model.g41658.t1, internal, 1505, 1586

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 906, 987
Sorry, prediction GeneMark_model.109290_t fails validation.
(TTG)	 AG	906-987	GT	AGG
(CCT)	 AG	1362-1387	GT	AGG
(GTG)	 AG	1724-1741	GT	GGG
(AGA)	 AG	1770-1793	GT	AAG
(AAG)	 AG	1874-1949	AC	GAA
-recovered GeneMark_model.109290_t, terminal, 1874, 1949
-recovered GeneMark_model.109290_t, internal, 906, 987
-recovered GeneMark_model.109290_t, internal, 1362, 1387
-recovered GeneMark_model.109290_t, internal, 1724, 1741
-recovered GeneMark_model.109290_t, internal, 1770, 1793

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2504
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support