-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1393

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 78, 168
Sorry, prediction Augustus_model.g41657.t1 fails validation.
(CTC)	 AG	78-168	GT	ACG
(AAA)	 AG	1667-1850	AC	GAA
-recovered Augustus_model.g41657.t1, terminal, 1667, 1850
-recovered Augustus_model.g41657.t1, internal, 78, 168
Valid prediction for snap_scaffold_1393-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_62623-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 591, 612
Sorry, prediction GeneMark_model.109289_t fails validation.
(GAG)	 AG	591-612	GT	AGG
(ACT)	 AG	641-652	GT	AGG
(GTT)	 AG	674-696	GT	CGG
(CGA)	 AG	738-885	GC	AGG
(ATG)	 AG	1015-1020	GT	GGG
(ATG)	 AG	1055-1129	GT	GAG
(AGA)	 AG	1164-1181	GT	GAG
(AGA)	 AG	1216-1233	GT	GAG
(GAG)	 AG	1254-1305	AT	AGA
-recovered GeneMark_model.109289_t, initial, 1015, 1020
add_exon() Sorry, GeneMark_model.109289_t 1055-1129-initial-1 is invalid.
-recovered GeneMark_model.109289_t, initial, 1055, 1129
-recovered GeneMark_model.109289_t, terminal, 1055, 1129
-recovered GeneMark_model.109289_t, terminal, 1164, 1181
-recovered GeneMark_model.109289_t, terminal, 1216, 1233
-recovered GeneMark_model.109289_t, terminal, 1254, 1305
-recovered GeneMark_model.109289_t, internal, 591, 612
-recovered GeneMark_model.109289_t, internal, 641, 652
-recovered GeneMark_model.109289_t, internal, 674, 696
-recovered GeneMark_model.109289_t, internal, 738, 885
-recovered GeneMark_model.109289_t, internal, 1015, 1020
-recovered GeneMark_model.109289_t, internal, 1055, 1129
-recovered GeneMark_model.109289_t, internal, 1164, 1181
-recovered GeneMark_model.109289_t, internal, 1216, 1233

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2504
-exon list size: 31


building trellis

3.0    
6.1    
9.1    
12.1    
15.2    
18.2    
21.2    
24.2    
27.3    
30.3    
33.3    
36.4    
39.4    
42.4    
45.5    
48.5    
51.5    
54.5    
57.6    
60.6    
63.6    
66.7    
69.7    
72.7    
75.8    
78.8    
81.8    
84.8    
87.9    
90.9    
93.9    
97.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support