-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1391

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62622-T1
Couldn't classify 72, 398
Sorry, prediction GeneMark_model.109288_t fails validation.
(GAC)	 AG	72-398	GT	GAG
(AGA)	 AG	553-561	GT	GTG
(ACA)	 AG	715-882	GT	CAG
(AGA)	 AG	921-933	TG	AGT
-recovered GeneMark_model.109288_t, terminal, 921, 933
-recovered GeneMark_model.109288_t, internal, 72, 398
-recovered GeneMark_model.109288_t, internal, 553, 561
-recovered GeneMark_model.109288_t, internal, 715, 882
Couldn't classify 72, 439
Sorry, prediction Augustus_model.g41656.t1 fails validation.
(GAC)	 AG	72-439	GT	CGG
(ATT)	 AG	583-671	GC	AGG
-recovered Augustus_model.g41656.t1, terminal, 583, 671
-recovered Augustus_model.g41656.t1, internal, 72, 439
-recovered Augustus_model.g41656.t1, internal, 583, 671
Couldn't classify 72, 439
Sorry, prediction snap_scaffold_1391-snap.1-T1 fails validation.
(GAC)	 AG	72-439	GT	CGG
-recovered snap_scaffold_1391-snap.1-T1, internal, 72, 439

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2511
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support