-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1389

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62621-T1
Couldn't classify 55, 347
Couldn't classify 471, 971
Sorry, prediction snap_scaffold_1389-snap.1-T1 fails validation.
(CTC)	 AG	55-347	GT	GCG
(TTG)	 AG	471-971	GT	AGG
-recovered snap_scaffold_1389-snap.1-T1, internal, 55, 347
-recovered snap_scaffold_1389-snap.1-T1, internal, 471, 971
Valid prediction for GeneMark_model.109286_t
add_exon() Sorry, GeneMark_model.109286_t 55-1214-terminal-1 is invalid.
Couldn't classify 55, 971
Sorry, prediction Augustus_model.g41654.t1 fails validation.
(CTC)	 AG	55-971	GT	AGG
(TTG)	 AG	2217-2285	GT	GAG
-recovered Augustus_model.g41654.t1, terminal, 2217, 2285
-recovered Augustus_model.g41654.t1, internal, 55, 971
-recovered Augustus_model.g41654.t1, internal, 2217, 2285

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2516
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support