-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1383

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1383-snap.1-T1
add_exon() Sorry, snap_scaffold_1383-snap.1-T1 809-1124-terminal-1 is invalid.
Couldn't classify 2040, 2115
Couldn't classify 2351, 2453
Sorry, prediction Augustus_model.g41652.t1 fails validation.
(CGG)	 AG	2040-2115	GT	AGG
(GTT)	 AG	2351-2453	GT	GGG
-recovered Augustus_model.g41652.t1, internal, 2040, 2115
-recovered Augustus_model.g41652.t1, internal, 2351, 2453
Valid prediction for GeneMark_model.109282_t
Couldn't classify 2351, 2453
Sorry, prediction snap_scaffold_1383-snap.2-T1 fails validation.
(ATG)	 AG	1237-1511	GT	AGG
(GAA)	 AG	2066-2115	GT	AGG
(GTT)	 AG	2351-2453	GT	GGG
-recovered snap_scaffold_1383-snap.2-T1, initial, 1237, 1511
-recovered snap_scaffold_1383-snap.2-T1, internal, 1237, 1511
-recovered snap_scaffold_1383-snap.2-T1, internal, 2066, 2115
-recovered snap_scaffold_1383-snap.2-T1, internal, 2351, 2453

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.109281_t
Couldn't classify 9, 114
Sorry, prediction GeneMark_model.109283_t fails validation.
(AGA)	 AG	9-114	GT	CTG
(AGA)	 AG	220-258	GT	ATG
(GGT)	 AG	458-475	GT	AAG
(AGC)	 AG	511-525	GT	GAG
(GGC)	 AG	552-635	GT	AGG
(AGG)	 AG	661-709	TT	AAT
-recovered GeneMark_model.109283_t, terminal, 661, 709
-recovered GeneMark_model.109283_t, internal, 9, 114
-recovered GeneMark_model.109283_t, internal, 220, 258
-recovered GeneMark_model.109283_t, internal, 458, 475
-recovered GeneMark_model.109283_t, internal, 511, 525
-recovered GeneMark_model.109283_t, internal, 552, 635

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2529
-exon list size: 29


building trellis

3.2    
6.5    
9.7    
12.9    
16.1    
19.4    
22.6    
25.8    
29.0    
32.3    
35.5    
38.7    
41.9    
45.2    
48.4    
51.6    
54.8    
58.1    
61.3    
64.5    
67.7    
71.0    
74.2    
77.4    
80.6    
83.9    
87.1    
90.3    
93.5    
96.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support