-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1382

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 12, 59
Sorry, prediction GeneMark_model.109280_t fails validation.
(GCA)	 AG	12-59	GT	CAG
(ACA)	 AG	398-454	GT	GAG
(AAA)	 AG	478-606	GT	AAG
(GCT)	 AG	660-680	GT	AGG
(ACT)	 AG	862-909	GT	GGG
(GGG)	 AG	932-1037	AC	AAA
-recovered GeneMark_model.109280_t, terminal, 932, 1037
-recovered GeneMark_model.109280_t, internal, 12, 59
-recovered GeneMark_model.109280_t, internal, 398, 454
-recovered GeneMark_model.109280_t, internal, 478, 606
-recovered GeneMark_model.109280_t, internal, 660, 680
-recovered GeneMark_model.109280_t, internal, 862, 909
Couldn't classify 1034, 1108
Couldn't classify 1329, 1538
Sorry, prediction snap_scaffold_1382-snap.1-T1 fails validation.
(GTA)	 AG	1034-1108	GT	TGG
(CTC)	 AG	1329-1538	GT	AGG
-recovered snap_scaffold_1382-snap.1-T1, internal, 1034, 1108
-recovered snap_scaffold_1382-snap.1-T1, internal, 1329, 1538
Valid prediction for GlimmerHMM_glimmerT_62620-T1
Couldn't classify 2219, 2518
Sorry, prediction GeneMark_model.109279_t fails validation.
(ATG)	 CC	2071-2087	GT	GAG
(GGG)	 AG	2141-2191	GT	GAG
(GGG)	 AG	2219-2518	GC	TGG
-recovered GeneMark_model.109279_t, initial, 2071, 2087
-recovered GeneMark_model.109279_t, internal, 2141, 2191
-recovered GeneMark_model.109279_t, internal, 2219, 2518

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2529
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support