-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1380

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62619-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2250, 2381
Sorry, prediction GeneMark_model.109276_t fails validation.
(ATG)	 GC	1573-1613	GT	GGG
(GGG)	 AG	1688-1797	GC	GGG
(CGT)	 AG	2076-2091	GT	CGG
(GGT)	 AG	2250-2381	GT	GAG
-recovered GeneMark_model.109276_t, initial, 1573, 1613
-recovered GeneMark_model.109276_t, internal, 1688, 1797
-recovered GeneMark_model.109276_t, internal, 2076, 2091
-recovered GeneMark_model.109276_t, internal, 2250, 2381
Couldn't classify 35, 142
Sorry, prediction GeneMark_model.109277_t fails validation.
(GAA)	 AG	35-142	GT	AAG
(ATA)	 AG	231-257	GT	CAG
(AGA)	 AG	979-1141	TT	GAT
-recovered GeneMark_model.109277_t, terminal, 979, 1141
-recovered GeneMark_model.109277_t, internal, 35, 142
-recovered GeneMark_model.109277_t, internal, 231, 257

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2532
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support