-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_138

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.106707_t
Couldn't classify 981, 1109
Sorry, prediction snap_scaffold_138-snap.1-T1 fails validation.
(GAT)	 AG	981-1109	GT	AAG
(GGC)	 AG	11028-11330	GT	CAG
(CCC)	 AG	12562-13029	GG	AAG
-recovered snap_scaffold_138-snap.1-T1, terminal, 12562, 13029
-recovered snap_scaffold_138-snap.1-T1, internal, 981, 1109
-recovered snap_scaffold_138-snap.1-T1, internal, 11028, 11330
Valid prediction for GeneMark_model.106708_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61366-T1
Valid prediction for GeneMark_model.106705_t
Couldn't classify 434, 542
Couldn't classify 1788, 2028
Sorry, prediction snap_scaffold_138-snap.2-T1 fails validation.
(GGC)	 AG	434-542	GT	GGG
(TCC)	 AG	732-889	GT	CAG
(GCT)	 AG	1788-2028	GT	CAG
-recovered snap_scaffold_138-snap.2-T1, internal, 434, 542
-recovered snap_scaffold_138-snap.2-T1, internal, 732, 889
-recovered snap_scaffold_138-snap.2-T1, internal, 1788, 2028
Couldn't classify 12769, 12910
Sorry, prediction GeneMark_model.106704_t fails validation.
(ATG)	 TC	12274-12293	GT	GTG
(AAG)	 AG	12679-12738	GT	AGG
(AAA)	 AG	12769-12910	GT	AGG
-recovered GeneMark_model.106704_t, initial, 12274, 12293
-recovered GeneMark_model.106704_t, internal, 12679, 12738
-recovered GeneMark_model.106704_t, internal, 12769, 12910
Valid prediction for GeneMark_model.106706_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 13029, rend_intergenic: 11069  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 13096
-exon list size: 54


building trellis

1.8    
3.6    
5.4    
7.1    
8.9    
10.7    
12.5    
14.3    
16.1    
17.9    
19.6    
21.4    
23.2    
25.0    
26.8    
28.6    
30.4    
32.1    
33.9    
35.7    
37.5    
39.3    
41.1    
42.9    
44.6    
46.4    
48.2    
50.0    
51.8    
53.6    
55.4    
57.1    
58.9    
60.7    
62.5    
64.3    
66.1    
67.9    
69.6    
71.4    
73.2    
75.0    
76.8    
78.6    
80.4    
82.1    
83.9    
85.7    
87.5    
89.3    
91.1    
92.9    
94.6    
96.4    
98.2    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 13029, rend_intergenic: 11069  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support