-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1379

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2262, 2278
Sorry, prediction GeneMark_model.109275_t fails validation.
(ATG)	 TG	1116-1180	GT	GGG
(AGA)	 AG	1214-1222	GT	GGG
(GGG)	 AG	1262-1267	GT	GGG
(GGG)	 AG	1288-1305	GT	GGG
(AGA)	 AG	1330-1389	GT	GGG
(CCA)	 AG	1417-1459	GT	GAG
(GAA)	 AG	2262-2278	GT	GAG
-recovered GeneMark_model.109275_t, initial, 1116, 1180
-recovered GeneMark_model.109275_t, internal, 1214, 1222
-recovered GeneMark_model.109275_t, internal, 1262, 1267
-recovered GeneMark_model.109275_t, internal, 1288, 1305
-recovered GeneMark_model.109275_t, internal, 1330, 1389
-recovered GeneMark_model.109275_t, internal, 1417, 1459
-recovered GeneMark_model.109275_t, internal, 2262, 2278

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2305, 2354
Sorry, prediction GeneMark_model.109274_t fails validation.
(ATG)	 GG	1725-1729	GT	AGG
(AGA)	 AG	1811-1843	GT	ATG
(GAG)	 AG	1951-2064	GT	GAG
(AAG)	 AG	2087-2173	GT	TGG
(GAA)	 AG	2197-2205	GC	GAG
(GAG)	 AG	2238-2282	GT	AAG
(AGG)	 AG	2305-2354	GT	CAG
-recovered GeneMark_model.109274_t, initial, 1725, 1729
-recovered GeneMark_model.109274_t, internal, 1811, 1843
-recovered GeneMark_model.109274_t, internal, 1951, 2064
-recovered GeneMark_model.109274_t, internal, 2087, 2173
-recovered GeneMark_model.109274_t, internal, 2197, 2205
-recovered GeneMark_model.109274_t, internal, 2238, 2282
-recovered GeneMark_model.109274_t, internal, 2305, 2354
Couldn't classify 36, 185
Sorry, prediction snap_scaffold_1379-snap.1-T1 fails validation.
(AAC)	 AG	36-185	GT	TGG
(AGG)	 AG	1949-2154	GA	GAG
-recovered snap_scaffold_1379-snap.1-T1, terminal, 1949, 2154
-recovered snap_scaffold_1379-snap.1-T1, internal, 36, 185

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2533
-exon list size: 34


building trellis

2.8    
5.6    
8.3    
11.1    
13.9    
16.7    
19.4    
22.2    
25.0    
27.8    
30.6    
33.3    
36.1    
38.9    
41.7    
44.4    
47.2    
50.0    
52.8    
55.6    
58.3    
61.1    
63.9    
66.7    
69.4    
72.2    
75.0    
77.8    
80.6    
83.3    
86.1    
88.9    
91.7    
94.4    
97.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support