-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1378

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 60, 104
Sorry, prediction GeneMark_model.109273_t fails validation.
(GAG)	 AG	60-104	GT	AGG
(AGA)	 AG	566-956	GT	CAG
(TTG)	 AG	1183-1254	TT	AGT
-recovered GeneMark_model.109273_t, terminal, 1183, 1254
-recovered GeneMark_model.109273_t, internal, 60, 104
-recovered GeneMark_model.109273_t, internal, 566, 956
Valid prediction for Augustus_model.g41651.t1
Valid prediction for GlimmerHMM_glimmerT_62618-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_1378-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2535
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support