-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1377

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 218, 338
Sorry, prediction snap_scaffold_1377-snap.2-T1 fails validation.
(GAG)	 AG	218-338	GT	AGG
(GCC)	 AG	1371-1429	TC	GAT
-recovered snap_scaffold_1377-snap.2-T1, terminal, 1371, 1429
-recovered snap_scaffold_1377-snap.2-T1, internal, 218, 338
Couldn't classify 234, 338
Sorry, prediction GeneMark_model.109271_t fails validation.
(AGA)	 AG	234-338	GT	AGG
(AGC)	 AG	646-688	GG	AGG
-recovered GeneMark_model.109271_t, terminal, 646, 688
-recovered GeneMark_model.109271_t, internal, 234, 338

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2325, 2440
Sorry, prediction Augustus_model.g41650.t1 fails validation.
(ATG)	 TG	1089-1134	GT	TGG
(TGT)	 AG	1788-1899	GT	AGG
(ATT)	 AG	2325-2440	GT	CAG
-recovered Augustus_model.g41650.t1, initial, 1089, 1134
-recovered Augustus_model.g41650.t1, internal, 1788, 1899
-recovered Augustus_model.g41650.t1, internal, 2325, 2440
Couldn't classify 1788, 1899
Couldn't classify 2325, 2446
Sorry, prediction snap_scaffold_1377-snap.1-T1 fails validation.
(TGT)	 AG	1788-1899	GT	AGG
(ATT)	 AG	2325-2446	GT	TTG
-recovered snap_scaffold_1377-snap.1-T1, internal, 1788, 1899
-recovered snap_scaffold_1377-snap.1-T1, internal, 2325, 2446
Valid prediction for GeneMark_model.109272_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 749, rend_intergenic: 218  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2536
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 749, rend_intergenic: 218  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support