-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1375

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1375-snap.1-T1
Couldn't classify 156, 272
Couldn't classify 1522, 1566
Sorry, prediction GeneMark_model.109270_t fails validation.
(GGT)	 AG	156-272	GT	CAG
(GTA)	 AG	544-592	GT	CGG
(GGA)	 AG	615-731	GT	GAG
(GGC)	 AG	781-792	GT	GAG
(GGC)	 AG	1253-1339	GT	GAG
(AGA)	 AG	1362-1458	GT	TAG
(ACT)	 AG	1478-1497	GT	GGG
(CGA)	 AG	1522-1566	GT	GAG
-recovered GeneMark_model.109270_t, terminal, 781, 792
-recovered GeneMark_model.109270_t, internal, 156, 272
-recovered GeneMark_model.109270_t, internal, 544, 592
-recovered GeneMark_model.109270_t, internal, 615, 731
-recovered GeneMark_model.109270_t, internal, 781, 792
-recovered GeneMark_model.109270_t, internal, 1253, 1339
-recovered GeneMark_model.109270_t, internal, 1362, 1458
-recovered GeneMark_model.109270_t, internal, 1478, 1497
-recovered GeneMark_model.109270_t, internal, 1522, 1566

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2542
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support