-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1374

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g41649.t1
add_exon() Sorry, Augustus_model.g41649.t1 62-188-terminal-1 is invalid.
Couldn't classify 62, 179
Sorry, prediction GeneMark_model.109267_t fails validation.
(GTT)	 AG	62-179	GT	AGG
(GAA)	 AG	221-285	GT	GAG
(GGA)	 AG	374-397	GT	GGG
(TGG)	 AG	443-451	GT	AGG
(AGG)	 AG	474-492	CG	GAC
-recovered GeneMark_model.109267_t, terminal, 474, 492
-recovered GeneMark_model.109267_t, internal, 62, 179
-recovered GeneMark_model.109267_t, internal, 221, 285
-recovered GeneMark_model.109267_t, internal, 374, 397
-recovered GeneMark_model.109267_t, internal, 443, 451
Valid prediction for GeneMark_model.109269_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.109268_t
Couldn't classify 103, 215
Sorry, prediction snap_scaffold_1374-snap.1-T1 fails validation.
(GGG)	 AG	103-215	GT	AGG
(GCT)	 AG	1297-1441	GT	AGG
(AGT)	 AG	2210-2228	GT	CAG
(GTT)	 AG	2274-2400	AT	AGA
-recovered snap_scaffold_1374-snap.1-T1, terminal, 2274, 2400
-recovered snap_scaffold_1374-snap.1-T1, internal, 103, 215
-recovered snap_scaffold_1374-snap.1-T1, internal, 1297, 1441
-recovered snap_scaffold_1374-snap.1-T1, internal, 2210, 2228

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2545
-exon list size: 28


building trellis

3.3    
6.7    
10.0    
13.3    
16.7    
20.0    
23.3    
26.7    
30.0    
33.3    
36.7    
40.0    
43.3    
46.7    
50.0    
53.3    
56.7    
60.0    
63.3    
66.7    
70.0    
73.3    
76.7    
80.0    
83.3    
86.7    
90.0    
93.3    
96.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support