-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1373

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 38, 74
Couldn't classify 2083, 2334
Sorry, prediction GeneMark_model.109266_t fails validation.
(ACA)	 AG	38-74	GT	GGG
(GAT)	 AG	1083-1231	GT	GGG
(GAC)	 AG	1561-1749	GT	AGG
(TGA)	 AG	1771-1948	GT	TGG
(AAG)	 AG	2083-2334	GT	GGG
-recovered GeneMark_model.109266_t, internal, 38, 74
-recovered GeneMark_model.109266_t, internal, 1083, 1231
-recovered GeneMark_model.109266_t, internal, 1561, 1749
-recovered GeneMark_model.109266_t, internal, 1771, 1948
-recovered GeneMark_model.109266_t, internal, 2083, 2334
Valid prediction for GlimmerHMM_glimmerT_62616-T1
Valid prediction for GlimmerHMM_glimmerT_62617-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1346, 1554
Sorry, prediction snap_scaffold_1373-snap.1-T1 fails validation.
(ATG)	 CC	500-544	GT	CAG
(GGG)	 AG	755-983	GT	ACG
(CTC)	 AG	1346-1554	GT	GGG
-recovered snap_scaffold_1373-snap.1-T1, initial, 500, 544
-recovered snap_scaffold_1373-snap.1-T1, internal, 755, 983
-recovered snap_scaffold_1373-snap.1-T1, internal, 1346, 1554
Valid prediction for Augustus_model.g41648.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2546
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support